## What changed
- Atomically save successfully persisted, loaded root thread IDs to `app-server-daemon/loaded-threads.json` during graceful managed shutdown, excluding ephemeral threads and threads pending unload.
- Clear stale recovery state at startup and around daemon lifecycle operations, including explicit stops and fresh starts.
- Probe support for `--managed-daemon` before launching managed app servers, and clear recovery state best-effort when launching older binaries.
- Keep forced shutdown responsive while saving the snapshot and log snapshot failures without preventing shutdown.
## Testing
Add coverage for snapshots after active turns finish, forced shutdown without a snapshot, excluded threads, snapshot write failures, and recovery-state cleanup for stops, fresh starts, and legacy launches.
GitOrigin-RevId: 422dc32b85355510f7e4c57b7540597b47d9f0b2
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