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ioanbudea-OAI 2728f99126 Upgrade bundled SQLite to 3.54 for WAL fixes (#60432) 
## Why

SQLite 3.54 fixes `RUSTSEC-2026-0459` when opening a database with a WAL, while retaining the WAL-reset corruption fix.

## What changed

- Upgrade `libsqlite3-sys` to `0.39.1` and require SQLite 3.54 or newer with a compile-time assertion in `codex-state`.
- Pin `sqlx-core` and `sqlx-sqlite` to the same upstream revision that supports the newer SQLite dependency, and allow that Git source in `cargo-deny`.
- Refresh the Cargo and Bazel lockfiles.

GitOrigin-RevId: 768224af79de9b71b21d14912ff01a1176ad37c3
2026-11-09 19:26:23 +00:00
..
.cargo
Ignore the unmaintained pin-utils advisory in dependency audits (#59638)
2026-11-05 11:22:06 +00:00
.config
…
agent-graph-store
Persist subagent relationships before creating child storage (#58129)
2026-10-29 17:25:51 +00:00
agent-identity
Wire shared runtime authentication through threads and API clients (#59177)
2026-11-03 15:02:57 +00:00
agent-message-board-client
Route message-board notifications through agent mailboxes (#59139)
2026-11-03 12:33:26 +00:00
agent-message-board-host
Extract channel notification formatting into PostPreview (#59688)
2026-11-05 16:08:23 +00:00
agent-roles
…
analytics
Propagate turn triggers to usage analytics events (#60018)
2026-11-07 01:25:00 +00:00
ansi-escape
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app-server
Enable model catalog discovery with gateway OAuth (#60414)
2026-11-09 16:37:22 +00:00
app-server-client
Suppress stale cloud stream disconnects after reopening a thread (#60327)
2026-11-09 02:31:46 +00:00
app-server-daemon
Classify daemon auto-start failures in TUI telemetry (#59058)
2026-11-03 04:20:50 +00:00
app-server-protocol
Allow deferring plain-text MCP output in thread item listings (#60390)
2026-11-09 12:54:12 +00:00
app-server-protocol-noop-macros
…
app-server-test-client
Scope local history discovery to the current ChatGPT account (#58918)
2026-11-02 16:00:20 +00:00
app-server-transport
Use runtime authentication for Analytics requests (#60101)
2026-11-07 10:41:36 +00:00
apply-patch
Support direct Guardian review of patches invoked through exec_command (#58931)
2026-11-02 17:05:56 +00:00
arg0
…
async-utils
…
attachment-store
Use measured durations to budget uploaded audio (#59268)
2026-11-04 00:19:12 +00:00
aws-auth
…
backend-client
Use runtime authentication for Analytics requests (#60101)
2026-11-07 10:41:36 +00:00
build-info
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bwrap
…
chatgpt
Use runtime authentication for OpenAI MCP and app requests (#59749)
2026-11-05 22:03:29 +00:00
cli
Keep the agents overview open when there is no chat to return to (#60271)
2026-11-08 17:26:39 +00:00
cloud-client
Include Codex Apps configuration in cloud prewarm requests (#60389)
2026-11-09 12:52:52 +00:00
cloud-config
Add ChatGPT token stdin authentication to exec-server (#59569)
2026-11-05 04:25:19 +00:00
cloud-tasks
Use runtime authentication across backend request paths (#59572)
2026-11-05 05:09:32 +00:00
cloud-tasks-client
Use runtime authentication across backend request paths (#59572)
2026-11-05 05:09:32 +00:00
cloud-tasks-mock-client
…
code-mode
Tie gRPC code-mode connection lifetime to live sessions (#59783)
2026-11-06 01:49:33 +00:00
code-mode-host
Tie gRPC code-mode connection lifetime to live sessions (#59783)
2026-11-06 01:49:33 +00:00
code-mode-protocol
Add support for incremental code mode tool definitions (#60157)
2026-11-07 18:24:25 +00:00
code-mode-runtime
Enable server-side output truncation for Code Mode sessions (#57870)
2026-10-29 01:04:48 +00:00
codex-api
Stop retrying terminal runtime authentication denials (#60096)
2026-11-07 09:48:46 +00:00
codex-backend-openapi-models
…
codex-client
…
codex-experimental-api-macros
…
codex-home
…
codex-mcp
Expose deferred MCP servers in resource listings (#60423)
2026-11-09 17:58:16 +00:00
collaboration-mode-templates
…
config
Add keyboard and mouse navigation for sidebar tabs (#60181)
2026-11-07 23:18:39 +00:00
config-schema
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connectors
Support app settings in plugin configuration (#58428)
2026-10-30 20:39:47 +00:00
context-fragments
Ensure side-chat policy reaches the first model request (#60067)
2026-11-07 05:59:44 +00:00
core
Expose deferred MCP servers in resource listings (#60423)
2026-11-09 17:58:16 +00:00
core-api
Enforce host-required cyber access programs per thread (#59754)
2026-11-05 22:49:46 +00:00
core-plugin-common
…
core-plugins
Allow plugin starter prompts up to 512 characters (#60048)
2026-11-07 03:08:46 +00:00
diagnostics
…
direct-tool-timing
Report auto-review overhead in turn critical-path analytics (#59260)
2026-11-03 23:49:01 +00:00
docs
Run Bazel CI locally without BuildBuddy credentials (#59055)
2026-11-03 04:08:59 +00:00
exec
Require explicit project trust in non-interactive runs (#60041)
2026-11-07 02:39:03 +00:00
exec-server
Expose agent tree IDs and environment removal (#60190)
2026-11-08 02:27:59 +00:00
exec-server-cli
Add ChatGPT token stdin authentication to exec-server (#59569)
2026-11-05 04:25:19 +00:00
exec-server-protocol
Cache empty remote skill discovery with filesystem watches (#57598)
2026-10-27 23:53:09 +00:00
execpolicy
Add opt-in Unicode canonical matching to exec policy rules (#59535)
2026-11-05 00:55:46 +00:00
ext
Treat goal objectives as untrusted context (#60342)
2026-11-09 03:58:05 +00:00
external-agent-migration
Carry targeted moderation decisions on final-answer messages (#59842)
2026-11-06 07:43:44 +00:00
features
Restrict legacy incremental tools to Amazon Bedrock providers (#60040)
2026-11-07 02:37:50 +00:00
feedback
…
file-search
Prioritize filename matches in fuzzy file search (#59709)
2026-11-05 17:34:20 +00:00
file-system
Remove the legacy sandbox policy constructor (#59772)
2026-11-06 00:37:27 +00:00
file-watcher
…
git-utils
Stabilize cross-platform tests and directory-change fork permissions (#59369)
2026-11-04 09:51:28 +00:00
guardian-context
Keep verified question/answer records whole under elastic budgets (#59902)
2026-11-06 12:49:54 +00:00
history
Normalize turn context permissions to a required profile (#59963)
2026-11-06 19:29:06 +00:00
hooks
…
http-client
Add device-code authorization for gateway OAuth (#59822)
2026-11-06 04:24:04 +00:00
install-context
…
keyring-store
…
linux-sandbox
Stabilize the unreadable-glob traversal error test (#59736)
2026-11-05 20:56:09 +00:00
lmstudio
…
login
Bind runtime auth to the provider's selected credential source (#59823)
2026-11-06 04:33:14 +00:00
memories
Use thread runtime auth for Guardian Decisions and memory quota checks (#60064)
2026-11-07 05:50:00 +00:00
mermaid
…
message-board
Decouple Guardian retrieval from local message-board handles (#60002)
2026-11-06 22:26:03 +00:00
message-board-mcp
Add opt-in MCP discovery for in-memory agent message boards (#58973)
2026-11-02 20:34:35 +00:00
message-history
…
model-provider
Enable model catalog discovery with gateway OAuth (#60414)
2026-11-09 16:37:22 +00:00
model-provider-info
Add device-code authorization for gateway OAuth (#59822)
2026-11-06 04:24:04 +00:00
models-manager
Enable model catalog discovery with gateway OAuth (#60414)
2026-11-09 16:37:22 +00:00
mxc-sandbox
Expand Windows deny-read globs without invoking ripgrep (#59250)
2026-11-03 23:00:54 +00:00
network-proxy
Derive MCP network policy and preserve saved denials (#60046)
2026-11-07 03:06:33 +00:00
ollama
…
otel
Add metrics for incremental exec catalog updates (#60177)
2026-11-07 22:38:11 +00:00
otel-trace-websocket
…
plugin
…
plugin-host
Add a bounded V8 runtime for UI plugin processes (#57508)
2026-10-27 16:36:32 +00:00
process-hardening
…
prompts
Simplify Guardian's post-denial approval guidance (#60391)
2026-11-09 12:54:46 +00:00
protocol
Allow deferring plain-text MCP output in thread item listings (#60390)
2026-11-09 12:54:12 +00:00
realtime-webrtc
…
response-debug-context
Stop retrying terminal runtime authentication denials (#60096)
2026-11-07 09:48:46 +00:00
responses-api-proxy
…
rmcp-client
Honor managed runtime authentication modes and expand coverage (#60014)
2026-11-07 00:18:36 +00:00
rollout
Persist local workspace side chats and add tab close controls (#60152)
2026-11-07 17:31:27 +00:00
rollout-trace
Preserve code mode dispatch errors in rollout traces (#60122)
2026-11-07 12:41:14 +00:00
runtime-agent-instance
Use runtime authentication for Analytics requests (#60101)
2026-11-07 10:41:36 +00:00
sandboxing
Centralize Windows sandbox filesystem override resolution (#60042)
2026-11-07 02:46:41 +00:00
scripts
…
secrets
Populate the local secrets cache after successful saves (#59520)
2026-11-04 23:46:52 +00:00
shell-command
…
skills
Route broad Codex setup questions through self-knowledge guidance (#59949)
2026-11-06 17:47:31 +00:00
state
Upgrade bundled SQLite to 3.54 for WAL fixes (#60432)
2026-11-09 19:26:23 +00:00
stdio-to-uds
…
tcp-tunnel
…
terminal-detection
Recognize Rex terminals and enable Kitty graphics for pets (#58270)
2026-10-30 07:11:56 +00:00
test-binary-support
…
thread-manager-sample
Resample Guardian denials with the original request (#59659)
2026-11-05 13:38:12 +00:00
thread-store
Preserve display instructions in answer moderation (#60172)
2026-11-07 21:31:08 +00:00
tools
Add support for incremental code mode tool definitions (#60157)
2026-11-07 18:24:25 +00:00
tui
Let terminal status become done while background terminals run (#60418)
2026-11-09 16:59:14 +00:00
uds
…
user-verification
…
utils
Allow deferring plain-text MCP output in thread item listings (#60390)
2026-11-09 12:54:12 +00:00
v8-poc
Test V8 inline typed array storage limits (#58385)
2026-10-30 16:35:54 +00:00
vendor
…
voice-host
Stabilize cross-platform tests and directory-change fork permissions (#59369)
2026-11-04 09:51:28 +00:00
websocket-auth
…
websocket-client
Wire shared runtime authentication through threads and API clients (#59177)
2026-11-03 15:02:57 +00:00
windows-sandbox-rs
Repair legacy Windows sandbox bin permissions for SYSTEM (#59745)
2026-11-05 21:33:57 +00:00
windows-sandbox-service
Repair legacy Windows sandbox bin permissions for SYSTEM (#59745)
2026-11-05 21:33:57 +00:00
workload-identity
Support API workload identity authentication (#59275)
2026-11-04 00:52:58 +00:00
worktree
…
.gitignore
…
BUILD.bazel
Ship the standalone executor in release packages (#57837)
2026-10-28 21:09:05 +00:00
Cargo.lock
Upgrade bundled SQLite to 3.54 for WAL fixes (#60432)
2026-11-09 19:26:23 +00:00
Cargo.toml
Upgrade bundled SQLite to 3.54 for WAL fixes (#60432)
2026-11-09 19:26:23 +00:00
clippy.toml
…
config.md
…
default.nix
…
deny.toml
Upgrade bundled SQLite to 3.54 for WAL fixes (#60432)
2026-11-09 19:26:23 +00:00
README.md
…
rust-toolchain.toml
…
rustfmt.toml
…

README.md

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