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Keep the Windows cmd.exe harness for apply_patch_cli, but encode the nested PowerShell read so cmd does not pass the script through as a quoted string literal. This preserves the test coverage while making the file-read path deterministic again.
Update the flaky-test ledger with the c14493260 CI failure and the new quoting diagnosis.
Co-authored-by: Codex <noreply@openai.com>