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This is a straight refactor, moving apply-patch-related code from `codex.rs` and into the new `apply_patch.rs` file. The only "logical" change is inlining `#[allow(clippy::unwrap_used)]` instead of declaring `#![allow(clippy::unwrap_used)]` at the top of the file (which is currently the case in `codex.rs`). --- [//]: # (BEGIN SAPLING FOOTER) Stack created with [Sapling](https://sapling-scm.com). Best reviewed with [ReviewStack](https://reviewstack.dev/openai/codex/pull/1703). * #1705 * __->__ #1703 * #1702 * #1698 * #1697