Michael Bolin a2c34edc75 Move workspace roots onto thread/session state and stop using active permission profile modifications as an overlay for writable roots. Existing app-server threads now preserve their persisted PermissionProfile value across resume, fork, and turn updates; permissions requests on existing threads only update the active named profile after validating it exists. Workspace roots can be updated independently, and SandboxPolicy::WorkspaceWrite no longer stores its own writable_roots.

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absolute-path

Disable empty Cargo test targets (#21584)

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approval-presets

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cache

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cargo-bin

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cli

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elapsed

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fuzzy-match

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home-dir

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image

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json-to-toml

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oss

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output-truncation

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path-utils

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plugins

Add plugin ID to skill analytics (#20923)

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pty

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readiness

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rustls-provider

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sandbox-summary

Move workspace roots onto thread/session state and stop using active permission profile modifications as an overlay for writable roots. Existing app-server threads now preserve their persisted PermissionProfile value across resume, fork, and turn updates; permissions requests on existing threads only update the active named profile after validating it exists. Workspace roots can be updated independently, and SandboxPolicy::WorkspaceWrite no longer stores its own writable_roots.

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sleep-inhibitor

Disable empty Cargo test targets (#21584)

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stream-parser

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string

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template

Disable empty Cargo test targets (#21584)

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