## Why
This PR
https://github.com/openai/codex/pull/24161#discussion_r3325692763
revealed a subagent data modeling issue, where we overloaded
`forked_from_id` to also mean `parent_thread_id`. That's incorrect since
guardian and review subagents can be a subagent and NOT fork the main
thread's history.
The solution here is to explicitly store a new `parent_thread_id` on
`SessionMeta`, alongside `forked_from_id` which already exists. While
we're at it, also expose it in the app-server protocol on the `Thread`
object.
A thread->subagent relationship and a fork of thread history are
orthogonal concepts.
## What Changed
- Added top-level `parent_thread_id` persistence on `SessionMeta` and
runtime/session plumbing through `SessionConfiguredEvent`,
`CodexSpawnArgs`, `SessionConfiguration`, `ThreadConfigSnapshot`,
`TurnContext`, and `ModelClient`.
- Made turn metadata, request headers, analytics, and subagent-start
events read the separate runtime/top-level parent field instead of
deriving general parent lineage from `SessionSource` or
`forked_from_thread_id`.
- Passed parent lineage separately at delegated subagent, review,
guardian, agent-job, and multi-agent spawn construction sites;
copied-history fork lineage remains derived only from `InitialHistory`.
- Persisted and exposed parent lineage through rollout/thread-store
projections and app-server v2 `Thread.parentThreadId`.
- Updated app-server README text and regenerated app-server schema
fixtures for the additive `parentThreadId` response field.
## Why
We recently added `forked_from_thread_id` which lets us trace where a
thread's _context_ comes from, but we also want to understand subagent
lineage (e.g. which parent thread spawned this subagent? what kind of
subagent is it?) which is orthogonal.
This PR adds `parent_thread_id` and `subagent_kind` to the
`x-codex-turn-metadata` header sent to ResponsesAPI.
## What changed
- Adds `parent_thread_id` and `subagent_kind` to core-owned
`x-codex-turn-metadata`.
- Restores persisted `SessionSource` and `ThreadSource` from resumed
session metadata so cold-resumed subagent threads keep their lineage on
later Responses API requests.
- Centralizes parent-thread extraction on `SessionSource` /
`SubAgentSource` and reuses it in the Responses client, analytics, agent
control, and state parsing paths.
- Extends reserved-key, git-enrichment, thread-spawn, and app-server v2
metadata coverage for the new lineage fields.
## Verification
- Not run locally per request.
- Added focused coverage in `core/src/turn_metadata_tests.rs` and
`app-server/tests/suite/v2/client_metadata.rs`.
## Why
Dynamic tools are defined at thread start and already stored in rollout
`SessionMeta`, which restores resumed and forked sessions. Persisting
the same tools through SQLite creates a second runtime persistence path
that is unnecessary prework for the explicit namespace refactor.
## What changed
- Restore missing thread-start dynamic tools directly from rollout
history, including when SQLite is enabled.
- Remove SQLite dynamic-tool reads, writes, backfill, and thread
metadata patch plumbing.
- Add SQLite-enabled resume integration coverage that verifies a
rollout-defined dynamic tool is still sent after resume.
## Compatibility
The existing `thread_dynamic_tools` table is intentionally not dropped
even though it's now unused. Older Codex binaries are allowed to open
databases migrated by newer binaries and still reference this table;
dropping it would break that mixed-version path. See
[here](https://github.com/openai/codex/blob/main/codex-rs/state/src/migrations.rs#L10-L11).
## Verification
- `just test -p codex-state -p codex-rollout -p codex-thread-store`
- `just test -p codex-core --test all
resume_restores_dynamic_tools_from_rollout_with_sqlite_enabled`
## Why
Codex stores thread, log, goal, and memory state in bundled SQLite
databases through SQLx. We have a suspected SQLite WAL-reset corruption
issue under heavy concurrent writer load, especially when multiple
subagents are active. The existing `sqlx 0.8.6` dependency kept us on an
older `libsqlite3-sys` / bundled SQLite, so this PR moves the SQLx stack
far enough forward to pick up the newer bundled SQLite library.
## What changed
- Bump the workspace `sqlx` dependency to `0.9.0`.
- Use the SQLx 0.9 feature names explicitly: `runtime-tokio`,
`tls-rustls`, and `sqlite-bundled`.
- Update `Cargo.lock` so `sqlx-sqlite` resolves through `libsqlite3-sys
0.37.0`.
- Refresh `MODULE.bazel.lock` for the dependency changes.
- Adapt `codex-state` to SQLx 0.9:
- build dynamic state queries with `QueryBuilder<Sqlite>` instead of
passing dynamic `String`s to `sqlx::query`;
- remove the old `QueryBuilder` lifetime parameter from helper
signatures;
- preserve SQLx's new `Migrator` fields when constructing runtime
migrators.
## Verification
- `just test -p codex-state`
- `just bazel-lock-check`
- `cargo check -p codex-state --tests`
## Summary
Generated memory rows and their stage-one/stage-two job state currently
live in `state_5.sqlite` alongside thread metadata. That makes memory
cleanup and regeneration share the main state schema even though those
rows are memory-pipeline data and can be rebuilt independently from the
durable thread records.
This PR moves the memory-owned tables into a dedicated
`memories_1.sqlite` runtime database while keeping thread metadata in
`state_5.sqlite`.
## Changes
- Adds a separate memories DB runtime, migrator, path helpers, telemetry
kind, and Bazel compile data for `state/memory_migrations`.
- Introduces `MemoryStore` behind `StateRuntime::memories()` and moves
memory table/job operations onto that store.
- Drops the old memory tables from the state DB and recreates their
schema in `state/memory_migrations/0001_memories.sql`.
- Updates memory startup, citation usage tracking, rollout pollution
handling, `debug clear-memories`, and app-server `memory/reset` to
operate through the memories DB.
- Preserves cross-DB behavior by hydrating thread metadata from the
state DB when selecting visible memory outputs and checking stage-one
staleness.
## Verification
- Added/updated `codex-state` tests for deleted-thread memory visibility
and already-polluted phase-two enqueue behavior.
- Updated `debug clear-memories`, app-server `memory/reset`, and
memories startup tests to seed and assert memory rows through
`memories_1.sqlite`.
## Why
Thread goals are moving toward extension-owned runtime behavior, but
their persisted state was still stored in the shared state database.
This makes the goal store harder to isolate and keeps future storage
splits tied to ad hoc runtime plumbing.
This PR gives goals their own SQLite database while keeping the existing
`StateRuntime` entry point. The goal is to make this the pattern for
adding more dedicated runtime databases later.
This also reduce load on existing DB and reduce contention
## Limitation
Thread preview from goal is not supported anymore. I'm looking into this
[EDIT]: solved
## What changed
- Added a dedicated `goals_1.sqlite` database with its own
`goals_migrations` directory.
- Moved `thread_goals` creation into the goals DB migration set.
- Dropped the old `thread_goals` table from the main state DB with a
normal state migration. There is intentionally no backfill for existing
goal rows.
- Changed `GoalStore` to be backed only by the goals DB pool.
- Removed the old goal-write side effect that filled empty
`threads.preview` values from the goal objective.
- Added shared runtime DB path metadata so startup, telemetry, `codex
doctor`, and repair handling can include future DBs without bespoke path
lists.
- Updated Bazel compile data so the new goals migration directory is
available to `sqlx::migrate!`.
## Verification
- `cargo check --tests -p codex-state -p codex-cli -p codex-core -p
codex-app-server`
- `just fix -p codex-state`
- `just fix -p codex-cli`
- `just fix -p codex-app-server`
## Why
Thread goal persistence is being prepared for a dedicated storage
boundary. Before that split, goal-specific reads, writes, accounting,
and cleanup were exposed directly on `StateRuntime`, so core and
app-server callsites stayed coupled to the full runtime instead of a
goal-specific store.
This PR introduces that boundary without changing the goal wire API or
current persistence behavior. Callers now go through
`StateRuntime::thread_goals()` and the new `GoalStore`, while
`GoalStore` still uses the existing state DB pool underneath.
## What changed
- Added `GoalStore` in `state/src/runtime/goals.rs` and exposed it from
`StateRuntime` via `thread_goals()`.
- Moved thread-goal reads, writes, status updates, pause, delete, and
usage accounting onto `GoalStore`.
- Updated core session goal handling, app-server goal RPCs, resume
snapshots, and goal tests to use the store boundary.
- Kept thread deletion responsible for cascading goal cleanup by
deleting the goal through the store only after a thread row is removed.
## Testing
- Existing goal persistence, resume, and accounting tests were updated
to exercise the new `GoalStore` access path.
Fixes#20792
## Why
`/goal`-first threads are valid resumable threads, but they can be
missing from `codex resume` and app recents because discovery depends on
metadata derived from a normal first user message.
PR #21489 attempted to fix this by using the goal objective as
`first_user_message`. Review feedback pointed out that
`first_user_message` does more than provide visible text today: it gates
listing, supplies preview text, and participates in deciding whether a
later title should surface as a distinct thread name. Reusing it for the
goal objective could leave a `/goal`-first thread with
`first_user_message=<goal>` and `title=<later prompt>`, even though the
goal should only provide the initial visible preview.
This PR follows that feedback by and keeps the `first_user_message` as
is but introduces a new `preview` field to separate concerns. The
`preview` field is populated from the first user message or the goal
objective. We can extend it in the future to include other sources.
## What Changed
- Added internal thread `preview` metadata in `codex-state`, including a
SQLite migration that backfills from `first_user_message` and from
existing `thread_goals` objectives when needed.
- Treated `ThreadGoalUpdated` as preview-bearing metadata so goal-first
threads can be listed and searched without mutating
`first_user_message`.
- Updated rollout listing, state queries, thread-store conversion, and
app-server mapping to use preview metadata while continuing to expose
the existing public `preview` field.
- Preserved title/name distinctness behavior around literal
`first_user_message`, so a later normal prompt after `/goal` does not
surface as a separate name just because the goal supplied the initial
preview.
- Preserved compatibility for older/internal metadata writes by deriving
preview from `first_user_message` when explicit preview metadata is
absent.
## Verification
- Manually verified that a thread that starts with a `/goal <objective>`
shows up in the resume picker.
## Summary
- make `thread_source` an explicit optional thread-level field on
`thread/start`, `thread/fork`, and returned thread payloads
- persist `thread_source` in rollout/session metadata so resumed live
threads retain the original value
- replace the old best-effort `session_source` -> `thread_source`
mapping with an explicit caller-supplied analytics classification
## Why
Before this change, analytics `thread_source` was populated by a
best-effort mapping from `session_source`. `session_source` describes
the runtime/client surface, not the actual thread-level origin, so that
projection was not accurate enough to distinguish cases such as `user`,
`subagent`, `memory_consolidation`, and future thread origins reliably.
Making `thread_source` explicit keeps one thread-level analytics field
while letting callers provide the real classification directly instead
of recovering it indirectly from `session_source`.
## Impact
For new analytics events, `thread_source` now reflects the explicit
thread-level classification supplied by the caller rather than an
inferred value derived from `session_source`. Existing protocol fields
remain optional; callers that omit `threadSource` now produce `null`
instead of a best-effort inferred value.
## Validation
- `just write-app-server-schema`
- `cargo test -p codex-analytics -p codex-core -p
codex-app-server-protocol --no-run`
- `cargo test -p codex-app-server-protocol
generated_ts_optional_nullable_fields_only_in_params`
- `cargo test -p codex-analytics
thread_initialized_event_serializes_expected_shape`
- `cargo test -p codex-core
resume_stopped_thread_from_rollout_preserves_thread_source`
- Route `thread/metadata/update` through
`ThreadStore::update_thread_metadata`.
- Add `LocalThreadStore` git metadata patch support for set, partial
update, and clear semantics.
- Add some unit tests for the new thread store code
- Remove a lot of dead code/tests!
## Summary
Persisted subagent parent/child topology currently leaks through
`StateRuntime`'s SQLite-specific thread-spawn helpers. This PR
introduces a narrow `AgentGraphStore` boundary so follow-up work can
route graph operations through a local or remote store without coupling
orchestration code directly to the state DB graph API.
## Changes
- Adds the new `codex-agent-graph-store` crate.
- Defines a flat `AgentGraphStore` trait for the v1 graph surface:
upsert edge, set edge status, list direct children, and list
descendants.
- Adds public graph types for `ThreadSpawnEdgeStatus`,
`AgentGraphStoreError`, and `AgentGraphStoreResult`.
- Implements `LocalAgentGraphStore` on top of an existing
`codex_state::StateRuntime`, preserving today's SQLite-backed
`thread_spawn_edges` behavior.
- Registers the crate in Cargo/Bazel metadata.
This PR only adds the local contract and implementation; call-site
migration and the remote gRPC store are left to the follow-up PRs in the
stack.
## Testing
- `cargo test -p codex-agent-graph-store`
The new unit tests cover local parity with the existing `StateRuntime`
graph methods, `Open`/`Closed` filtering, status updates, and stable
breadth-first descendant ordering.
## Summary
- Teach app-server `thread/list` to accept either a single `cwd` or an
array of cwd filters, returning threads whose recorded session cwd
matches any requested path
- Add `useStateDbOnly` as an explicit opt-in fast path for callers that
want to answer `thread/list` from SQLite without scanning JSONL rollout
files
- Preserve backwards compatibility: by default, `thread/list` still
scans JSONL rollouts and repairs SQLite state
- Wire the new cwd array and SQLite-only options through app-server,
local/remote thread-store, rollout listing, generated TypeScript/schema
fixtures, proto output, and docs
## Test Plan
- `cargo test -p codex-app-server-protocol`
- `cargo test -p codex-rollout`
- `cargo test -p codex-thread-store`
- `cargo test -p codex-app-server thread_list`
- `just fmt`
- `just fix -p codex-app-server-protocol -p codex-rollout -p
codex-thread-store -p codex-app-server`
- `cargo build -p codex-cli --bin codex`
## Summary
This PR fully reverts the previously merged Agent Identity runtime
integration from the old stack:
https://github.com/openai/codex/pull/17387/changes
It removes the Codex-side task lifecycle wiring, rollout/session
persistence, feature flag plumbing, lazy `auth.json` mutation,
background task auth paths, and request callsite changes introduced by
that stack.
This leaves the repo in a clean pre-AgentIdentity integration state so
the follow-up PRs can reintroduce the pieces in smaller reviewable
layers.
## Stack
1. This PR: full revert
2. https://github.com/openai/codex/pull/18871: move Agent Identity
business logic into a crate
3. https://github.com/openai/codex/pull/18785: add explicit
AgentIdentity auth mode and startup task allocation
4. https://github.com/openai/codex/pull/18811: migrate auth callsites
through AuthProvider
## Testing
Tests: targeted Rust checks, cargo-shear, Bazel lock check, and CI.
Deferred dynamic tools need to round-trip a namespace so a tool returned
by `tool_search` can be called through the same registry key that core
uses for dispatch.
This change adds namespace support for dynamic tool specs/calls,
persists it through app-server thread state, and routes dynamic tool
calls by full `ToolName` while still sending the app the leaf tool name.
Deferred dynamic tools must provide a namespace; non-deferred dynamic
tools may remain top-level.
It also introduces `LoadableToolSpec` as the shared
function-or-namespace Responses shape used by both `tool_search` output
and dynamic tool registration, so dynamic tools use the same wrapping
logic in both paths.
Validation:
- `cargo test -p codex-tools`
- `cargo test -p codex-core tool_search`
---------
Co-authored-by: Sayan Sisodiya <sayan@openai.com>
## Summary
- persist registered agent tasks in the session state update stream so
the thread can reuse them
- prewarm task registration once identity registration succeeds, while
keeping startup failures best-effort
- isolate the session-side task lifecycle into a dedicated module so
AgentIdentityManager and RegisteredAgentTask do not leak across as many
core layers
## Testing
- cargo test -p codex-core startup_agent_task_prewarm
- cargo test -p codex-core
cached_agent_task_for_current_identity_clears_stale_task
- cargo test -p codex-core record_initial_history_
To improve performance of UI loads from the app, add two main
improvements:
1. The `thread/list` api now gets a `sortDirection` request field and a
`backwardsCursor` to the response, which lets you paginate forwards and
backwards from a window. This lets you fetch the first few items to
display immediately while you paginate to fill in history, then can
paginate "backwards" on future loads to catch up with any changes since
the last UI load without a full reload of the entire data set.
2. Added a new `thread/turns/list` api which also has sortDirection and
backwardsCursor for the same behavior as `thread/list`, allowing you the
same small-fetch for immediate display followed by background fill-in
and resync catchup.
To allow the ability to have guaranteed-unique cursors, we make two
important updates:
* Add new updated_at_ms and created_at_ms columns that are in
millisecond precision
* Guarantee uniqueness -- if multiple items are inserted at the same
millisecond, bump the new one by one millisecond until it becomes unique
This lets us use single-number cursors for forwards and backwards paging
through resultsets and guarantee that the cursor is a fixed point to do
(timestamp > cursor) and get new items only.
This updated implementation is backwards-compatible since multiple
appservers can be running and won't handle the previous method well.
## Why
`argument-comment-lint` was green in CI even though the repo still had
many uncommented literal arguments. The main gap was target coverage:
the repo wrapper did not force Cargo to inspect test-only call sites, so
examples like the `latest_session_lookup_params(true, ...)` tests in
`codex-rs/tui_app_server/src/lib.rs` never entered the blocking CI path.
This change cleans up the existing backlog, makes the default repo lint
path cover all Cargo targets, and starts rolling that stricter CI
enforcement out on the platform where it is currently validated.
## What changed
- mechanically fixed existing `argument-comment-lint` violations across
the `codex-rs` workspace, including tests, examples, and benches
- updated `tools/argument-comment-lint/run-prebuilt-linter.sh` and
`tools/argument-comment-lint/run.sh` so non-`--fix` runs default to
`--all-targets` unless the caller explicitly narrows the target set
- fixed both wrappers so forwarded cargo arguments after `--` are
preserved with a single separator
- documented the new default behavior in
`tools/argument-comment-lint/README.md`
- updated `rust-ci` so the macOS lint lane keeps the plain wrapper
invocation and therefore enforces `--all-targets`, while Linux and
Windows temporarily pass `-- --lib --bins`
That temporary CI split keeps the stricter all-targets check where it is
already cleaned up, while leaving room to finish the remaining Linux-
and Windows-specific target-gated cleanup before enabling
`--all-targets` on those runners. The Linux and Windows failures on the
intermediate revision were caused by the wrapper forwarding bug, not by
additional lint findings in those lanes.
## Validation
- `bash -n tools/argument-comment-lint/run.sh`
- `bash -n tools/argument-comment-lint/run-prebuilt-linter.sh`
- shell-level wrapper forwarding check for `-- --lib --bins`
- shell-level wrapper forwarding check for `-- --tests`
- `just argument-comment-lint`
- `cargo test` in `tools/argument-comment-lint`
- `cargo test -p codex-terminal-detection`
## Follow-up
- Clean up remaining Linux-only target-gated callsites, then switch the
Linux lint lane back to the plain wrapper invocation.
- Clean up remaining Windows-only target-gated callsites, then switch
the Windows lint lane back to the plain wrapper invocation.
- create `codex-git-utils` and move the shared git helpers into it with
file moves preserved for diff readability
- move the `GitInfo` helpers out of `core` so stacked rollout work can
depend on the shared crate without carrying its own git info module
---------
Co-authored-by: Ahmed Ibrahim <219906144+aibrahim-oai@users.noreply.github.com>
Co-authored-by: Codex <noreply@openai.com>
This PR add an URI-based system to reference agents within a tree. This
comes from a sync between research and engineering.
The main agent (the one manually spawned by a user) is always called
`/root`. Any sub-agent spawned by it will be `/root/agent_1` for example
where `agent_1` is chosen by the model.
Any agent can contact any agents using the path.
Paths can be used either in absolute or relative to the calling agents
Resume is not supported for now on this new path
Add a representation of the agent graph. This is now used for:
* Cascade close agents (when I close a parent, it close the kids)
* Cascade resume (oposite)
Later, this will also be used for post-compaction stuffing of the
context
Direct fix for: https://github.com/openai/codex/issues/14458
### Summary
The goal is for us to get the latest turn model and reasoning effort on
thread/resume is no override is provided on the thread/resume func call.
This is the part 1 which we write the model and reasoning effort for a
thread to the sqlite db and there will be a followup PR to consume the
two new fields on thread/resume.
[part 2 PR is currently WIP](https://github.com/openai/codex/pull/14888)
and this one can be merged independently.
## Why
Once the repo-local lint exists, `codex-rs` needs to follow the
checked-in convention and CI needs to keep it from drifting. This commit
applies the fallback `/*param*/` style consistently across existing
positional literal call sites without changing those APIs.
The longer-term preference is still to avoid APIs that require comments
by choosing clearer parameter types and call shapes. This PR is
intentionally the mechanical follow-through for the places where the
existing signatures stay in place.
After rebasing onto newer `main`, the rollout also had to cover newly
introduced `tui_app_server` call sites. That made it clear the first cut
of the CI job was too expensive for the common path: it was spending
almost as much time installing `cargo-dylint` and re-testing the lint
crate as a representative test job spends running product tests. The CI
update keeps the full workspace enforcement but trims that extra
overhead from ordinary `codex-rs` PRs.
## What changed
- keep a dedicated `argument_comment_lint` job in `rust-ci`
- mechanically annotate remaining opaque positional literals across
`codex-rs` with exact `/*param*/` comments, including the rebased
`tui_app_server` call sites that now fall under the lint
- keep the checked-in style aligned with the lint policy by using
`/*param*/` and leaving string and char literals uncommented
- cache `cargo-dylint`, `dylint-link`, and the relevant Cargo
registry/git metadata in the lint job
- split changed-path detection so the lint crate's own `cargo test` step
runs only when `tools/argument-comment-lint/*` or `rust-ci.yml` changes
- continue to run the repo wrapper over the `codex-rs` workspace, so
product-code enforcement is unchanged
Most of the code changes in this commit are intentionally mechanical
comment rewrites or insertions driven by the lint itself.
## Verification
- `./tools/argument-comment-lint/run.sh --workspace`
- `cargo test -p codex-tui-app-server -p codex-tui`
- parsed `.github/workflows/rust-ci.yml` locally with PyYAML
---
* -> #14652
* #14651
This extends dynamic_tool_calls to allow us to hide a tool from the
model context but still use it as part of the general tool calling
runtime (for ex from js_repl/code_mode)
## Summary
This is a purely mechanical refactor of `OtelManager` ->
`SessionTelemetry` to better convey what the struct is doing. No
behavior change.
## Why
`OtelManager` ended up sounding much broader than what this type
actually does. It doesn't manage OTEL globally; it's the session-scoped
telemetry surface for emitting log/trace events and recording metrics
with consistent session metadata (`app_version`, `model`, `slug`,
`originator`, etc.).
`SessionTelemetry` is a more accurate name, and updating the call sites
makes that boundary a lot easier to follow.
## Validation
- `just fmt`
- `cargo test -p codex-otel`
- `cargo test -p codex-core`
This branch:
* Avoid flushing DB when not necessary
* Filter events for which we perfom an `upsert` into the DB
* Add a dedicated update function of the `thread:updated_at` that is
lighter
This should significantly reduce the DB lock contention. If it is not
sufficient, we can de-sync the flush of the DB for `updated_at`
## Summary
- add the v2 `thread/metadata/update` API, including
protocol/schema/TypeScript exports and app-server docs
- patch stored thread `gitInfo` in sqlite without resuming the thread,
with validation plus support for explicit `null` clears
- repair missing sqlite thread rows from rollout data before patching,
and make those repairs safe by inserting only when absent and updating
only git columns so newer metadata is not clobbered
- keep sqlite authoritative for mutable thread git metadata by
preserving existing sqlite git fields during reconcile/backfill and only
using rollout `SessionMeta` git fields to fill gaps
- add regression coverage for the endpoint, repair paths, concurrent
sqlite writes, clearing git fields, and rollout/backfill reconciliation
- fix the login server shutdown race so cancelling before the waiter
starts still terminates `block_until_done()` correctly
## Testing
- `cargo test -p codex-state
apply_rollout_items_preserves_existing_git_branch_and_fills_missing_git_fields`
- `cargo test -p codex-state
update_thread_git_info_preserves_newer_non_git_metadata`
- `cargo test -p codex-core
backfill_sessions_preserves_existing_git_branch_and_fills_missing_git_fields`
- `cargo test -p codex-app-server thread_metadata_update`
- `cargo test`
- currently fails in existing `codex-core` grep-files tests with
`unsupported call: grep_files`:
- `suite::grep_files::grep_files_tool_collects_matches`
- `suite::grep_files::grep_files_tool_reports_empty_results`
Owen Lin