## Why
An `apply_patch` path can be replaced with a symlink after verification, allowing an unsandboxed patch operation to reach a different file than the one that was approved.
## What changed
- Add `follow_symlinks` options to executor filesystem reads, writes, metadata lookups, directory creation, and removal, including the corresponding `followSymlinks` protocol fields.
- Implement no-follow filesystem operations on Unix and Windows that reject links in any path component and restrict file access to regular files.
- Run `apply_patch` with symlink traversal disabled when an otherwise-required sandbox is bypassed, while retaining the existing follow-symlink default for standalone callers.
## Testing
- Cover leaf and ancestor symlinks across patch add, update, delete, and move operations, including a path swap after verification.
- Exercise local and remote no-follow filesystem behavior, concurrent directory creation, special-file rejection, and Windows reparse points.
GitOrigin-RevId: 43fd479084891493ce13564fbd894b98f329c6dd
## Why
Updating a file with `apply_patch` historically normalized its contents to LF,
which can rewrite line endings outside the requested change.
## What changed
- Add an opt-in `PreserveLineEndings` update mode and thread it through patch
verification, application, and the standalone executable. Existing APIs keep
the LF-normalizing mode by default.
- Retain the original endings of untouched and context lines, including in
mixed-ending files, and use the file's first line ending for inserted or
replaced lines.
- Track patch context separately from identical changed lines so preservation
does not alter replacement ordering or matching.
## Testing
Add coverage for CRLF, CR, mixed endings, trailing blank lines, repeated lines,
EOF overlap rejection, and legacy LF normalization.
GitOrigin-RevId: 085f0cbc57e0965aa62c6a2d0e80870424e762f5
## Why
Allows the model to edit files that are hosted on a different OS than
where app-server is running.
## What
* Use `PathUri` for apply_patch-internal data structures
* Limit `PathUri` -> `AbsolutePathBuf` conversion to cases where the
inferred path convention matches the host OS, allows requiring valid
paths to pass to perms check
* Adds `PathConvention::path_segments()` for iterating over path
segments regardless of OS
* Handle cross-platform relative paths in path filename parsing for
sniffing a shell
* Ensure we can apply patches in the wine e2e test
## Summary
- replace filesystem-based turn diff tracking with an operation-backed
accumulator
- preserve enough verified apply_patch state to render move-overwrite
cases correctly
- keep the turn/diff/updated contract intact while removing remote-only
turn-diff test skips
This takes the assumption that no 3P services rely on the output format
of `apply_patch`
## Why
For the CCA file system isolation push
---------
Co-authored-by: Codex <noreply@openai.com>
- Migrate apply-patch verification and application internals to use the
async `ExecutorFileSystem` abstraction from `exec-server`.
- Convert apply-patch `cwd` handling to `AbsolutePathBuf` through the
verifier/parser/handler boundary.
Doesn't change how the tool itself works.
## Summary
I have read the contribution guidelines.
All changes in this PR are limited to text corrections and do not modify
any business logic, runtime behavior, or user-facing functionality.
## Details
This PR fixes several minor typos, including:
- `create` -> `crate`
- `analagous` -> `analogous`
- `apply-patch` -> `apply_patch`
- `codecs` -> `codex`
- ` '/" ` -> ` '/' `
- `Respesent` -> `Represent`
Historically, Codex CLI has treated `apply_patch` (and its sometimes
misspelling, `applypatch`) as a "virtual CLI," intercepting it when it
appears as the first arg to `command` for the `"container.exec",
`"shell"`, or `"local_shell"` tools.
This approach has a known limitation where if, say, the model created a
Python script that runs `apply_patch` and then tried to run the Python
script, we have no insight as to what the model is trying to do and the
Python Script would fail because `apply_patch` was never really on the
`PATH`.
One way to solve this problem is to require users to install an
`apply_patch` executable alongside the `codex` executable (or at least
put it someplace where Codex can discover it). Though to keep Codex CLI
as a standalone executable, we exploit "the arg0 trick" where we create
a temporary directory with an entry named `apply_patch` and prepend that
directory to the `PATH` for the duration of the invocation of Codex.
- On UNIX, `apply_patch` is a symlink to `codex`, which now changes its
behavior to behave like `apply_patch` if arg0 is `apply_patch` (or
`applypatch`)
- On Windows, `apply_patch.bat` is a batch script that runs `codex
--codex-run-as-apply-patch %*`, as Codex also changes its behavior if
the first argument is `--codex-run-as-apply-patch`.
