## What changed
- Track and log `McpRefreshReason` values for runtime refreshes, including invalidations received during thread startup and forced refreshes. Restore claimed reasons when a refresh is cancelled before publication, while preserving concurrent invalidations.
- Correlate installed-plugin metadata invalidations with downstream MCP refreshes using a shared change ID. Log changed field names by plugin ID, additions, removals, and reordering without logging field values.
- Record whether background installed-plugin bundle updates were requested by startup, plugin listing, or installation.
## Testing
Add coverage for metadata change attribution across membership changes and reordering, and for retaining refresh causes across cancellation and concurrent invalidation.
GitOrigin-RevId: 3d4485ccfcc1d8788eb9909a060ac200c467af13
## What changed
- Apply `disabled_plugin_ids` to plugin skills, recommendations, hooks, and MCP servers without modifying shared plugin state.
- Activate selection changes when the next task starts, keeping pending settings from changing the active runtime.
- Hide app tools contributed only by disabled plugins from model tool catalogs and search. Preserve connectors shared with enabled plugins and existing direct Apps RPC behavior.
- Include plugin identity in MCP approval keys and use that identity when persisting plugin tool approvals.
## Testing
Add regression coverage for disabling and re-enabling plugin skills and tools, deferred activation of settings, shared connector ownership, selected plugin servers, executor hooks, and plugin-specific approval keys and persistence.
GitOrigin-RevId: 1153ff6aa7ab6953d50e838da05203904ecd2956
Charlie Marsh