Pick up the AgentGraphStore migration.
- Inject an explicit optional agent graph store into `ThreadManager`
- Move all calls to spawn, close, recursive resume, and
subtree/archive/delete/feedback traversal through it
- Keep using `LocalAgentGraphStore` when SQLite is available
This required some changes to the interface to deal with futures:
- The interface now matches `ThreadStore`'s object-safe pattern by
returning a boxed `AgentGraphStoreFuture` directly, allowing
`ThreadManager` to hold `Arc<dyn AgentGraphStore>`
*Slight behavior change!* Unfiltered subtree enumeration now performs a
single all-status breadth-first traversal, so a closed grandchild
beneath an open edge is included; the previous Open-then-Closed
traversals could not cross mixed-status paths and silently omitted it.
## Why
`thread/list` can filter direct children with `parentThreadId`, but
clients cannot request an entire spawned subtree. Discovering every
descendant requires repeated client-side requests and gives up the
database's existing filtering and pagination path.
## What changed
Experimental clients can use `ancestorThreadId` to return strict
descendants at any depth while `parentThreadId` retains its direct-child
meaning. The filters are mutually exclusive, the ancestor is excluded,
and every result preserves its immediate `parentThreadId` so callers can
reconstruct the tree.
## How it works
- **Explicit relationship:** Internal list parameters distinguish direct
children from transitive descendants without changing the meaning of
`parentThreadId`.
- **Existing graph:** Persisted parent-child spawn edges remain the
source of truth, so descendant lookup needs no schema migration or
ancestry cache.
- **Indexed traversal:** A recursive SQLite query starts from the
parent-edge index, walks each generation, and applies thread filters,
sorting, and cursor pagination in the same database request.
- **Reconstructable results:** The response stays flat and normally
ordered while carrying each descendant's immediate parent.
## Verification
Ran 550 tests across the protocol, state, rollout, and thread-store
crates, then reran the four focused state, store, and app-server
descendant-listing tests after the final diff reduction. Scoped Clippy
and formatting checks passed. Stable and experimental schema generation
was checked; the stable fixtures remain unchanged while the experimental
schema includes the new field.
## Description
Rename the experimental app-server item pagination API from
`thread/turns/items/list` to `thread/items/list` and make `turnId`
optional. Clients can now page persisted items across a thread, or still
filter to one turn when needed.
## What changed
- Rename the request/response protocol types and JSON-RPC method to
`ThreadItemsList*` / `thread/items/list`.
- Pass optional `turnId` through to `ThreadStore::list_items`.
- Update app-server docs and focused protocol/app-server tests.
## Validation
- `just test -p codex-app-server-protocol thread_items_list_round_trips`
- `just test -p codex-app-server thread_items_list_returns_unsupported`
## Summary
Resuming a persisted thread currently deep-clones its complete rollout
history several times. `InitialHistory` is retained for the app-server
response, copied into thread persistence, and copied again by read-only
accessors. These copies scale with the complete rollout rather than the
bounded model context and add measurable latency for large sessions.
This change stores resumed rollout history in `Arc<Vec<RolloutItem>>`.
Rollout loading wraps the parsed vector once, while app-server response
construction, session initialization, and thread persistence share it
through inexpensive `Arc` clones. Read-only history access now returns a
borrowed slice, and fork paths use `Arc::unwrap_or_clone` where they
genuinely need mutable ownership. Rollout reconstruction also consumes
its temporary context instead of cloning the reconstructed model
history.
The serialized representation remains unchanged. In an artificial 123 MB
rollout benchmark, sharing resumed history reduced cold resume latency
by roughly 9–10%. The affected crates compile with their test targets,
all 80 thread-store tests pass, and the Bazel dependency lock remains
valid.
## Why
Once multi-agent mode can be selected per turn, clients also need to
choose the initial selection when creating a thread and observe that
selection through lifecycle and settings APIs.
The selected value is intentionally distinct from the effective
model-visible value: no client selection is represented as `null`, even
though an eligible multi-agent v2 turn derives `explicitRequestOnly` as
its effective default.
## What changed
- Add the optional experimental `thread/start.multiAgentMode` parameter
and pass it through thread creation.
- Preserve an omitted initial value as an unset selection rather than
eagerly storing `explicitRequestOnly`.
- Apply an explicit `thread/start` selection to the first turn through
the session configuration established at thread creation.
- Restore the latest persisted effective mode as the selected baseline
on cold resume when rollout history contains one.
- Inherit the optional selected mode from a loaded parent when creating
related runtime threads.
- Return the current selected `multiAgentMode` from `thread/start`,
`thread/resume`, `thread/fork`, and thread settings, using `null` when
no mode is selected.
- Keep lifecycle reporting independent from model capability and feature
eligibility; core turn construction remains responsible for calculating
and persisting the effective mode.
## Not covered
- Clearing an existing loaded-session selection back to unset through
`turn/start`; omitted or `null` currently retains the session's
selection.
- A TUI control, slash command, or `config.toml` preference.
## Verification
- `CARGO_INCREMENTAL=0 just test -p codex-app-server-protocol`
- `CARGO_INCREMENTAL=0 just test -p codex-app-server multi_agent_mode`
The focused app-server coverage verifies explicit `thread/start`
initialization, first-turn prompting, nullable reporting for an omitted
selection, and retention of selections that are not currently
runtime-eligible.
## Stack
Stacked on #28685. This PR contains only the thread initialization and
lifecycle/settings API layer.
## Why
Make it possible to load AGENTS.md from remote exec-servers whose OS is
different than app-server.
## What
- keep `AGENTS.md` discovery and provenance as `PathUri`, with
root-aware parent and ancestor traversal
- expose lifecycle instruction sources as legacy app-server path strings
in events while retaining `PathUri` internally
- preserve and test mixed POSIX and Windows paths in model context and
TUI status output
- cover remote Windows loading end to end by seeding the Wine prefix
through host filesystem APIs
- fix bug in `PathUri`'s parent() implementation that would erase
Windows drive letters
## Why
It should be possible for app-server to handle "foreign" OS paths in
unified_exec working directories, allowing e.g. a Linux app-server to
run processes on e.g. a Windows exec-server.
## What
Convert the core unified_exec cwd values to use `PathUri`.
Adds fallible path conversion in several places to try to minimize the
scope of this change. The only time this change suppresses errors from
converting `PathUri` to an `AbsolutePathBuf` is when the turn is
configured with no sandboxing at all to allow us to make progress
testing without sandboxing.
Future changes to apply_patch and sandboxing will clean up these error
paths.
A tool's cwd is resolved from joining a model-provided workdir to the
environment's cwd. When using `AbsolutePathBuf::join()`, an
absolute-path workdir would overwrite the environment's cwd and we would
resolve permissions/sandboxing against the model-provided path. This
change extends `PathUri::join()` to also treat an absolute rhs as an
override of the base/lhs.
This also removes some coverage from the remove_env_windows tests until
a follow-up converts foreign paths in command exec events correctly.
## Breaking Changes
When using `AbsolutePathBuf::join()` for workdir resolution, we ended up
resolving tilde-prefixed paths against the app-server's `$HOME`, e.g.
`~/foo/bar` becomes `/home/anp/foo/bar`. It's difficult to do this with
`PathUri` joining, so after offline discussion this PR no longer
implements it.
A quick check of some power users' rollouts suggests that models don't
actually generate home-prefixed absolute working directories for their
spawns, so this shouldn't have any real blast radius.
## Summary
- Revert #28655, restoring the thread `recencyAt` behavior introduced by
#27910.
- Move `threads_recency_at` to migration 0039 so it no longer collides
with `external_agent_config_imports` at version 0038.
- Repair databases that already applied the recency migration as version
38 by moving the matching migration-history row to version 39 before
SQLx validation. The current version-38 migration can then apply
normally.
## Validation
- `just test -p codex-state
migrations::tests::repairs_recency_migration_that_was_applied_as_version_38`
- `just test -p codex-state -p codex-rollout -p codex-thread-store -p
codex-app-server-protocol -p codex-tui`: 3,439 passed; six TUI tests
could not open the machine's existing read-only incident database at
`~/.codex/sqlite/state_5.sqlite`.
- `just fix -p codex-state`
- `just fmt`
- Verified that state migration versions are unique.
## Why
Revert #27910 to remove the newly introduced thread `recencyAt`
persistence and API behavior from `main`.
## What changed
This reverts commit `fac3158c2a783095768076489815f361fa9b0db4`,
including the state migration, thread-store propagation, app-server API
surface, generated schemas, and related tests.
## Validation
Not run before opening; relying on CI for the initial fast signal.
## Summary
Add a server-owned `recencyAt` timestamp and `recency_at` thread-list
sort key for product recency ordering while preserving the existing
meaning of `updatedAt` as the latest persisted thread mutation.
This is the server-side alternative to #27697. Rather than narrowing
`updatedAt`, clients can sort the sidebar by `recency_at` and continue
treating `updatedAt` as mutation time.
Paired Codex Apps PR:
[openai/openai#1024599](https://github.com/openai/openai/pull/1024599)
## Contract
- `recencyAt` initializes when a thread is created.
- A turn start advances `recencyAt` monotonically.
- Commentary, agent output, tool results, token/accounting updates, turn
completion, archive, unarchive, resume, and generic metadata writes do
not advance it.
- `updatedAt` retains its existing behavior and continues to advance for
persisted thread mutations.
- Current servers populate `recencyAt`; the response field is optional
in generated TypeScript so clients connected to older servers can fall
back to `updatedAt`.
- Filesystem-only fallback uses existing updated/mtime ordering when
SQLite is unavailable.
## Persistence and compatibility
Migration 0038 adds second- and millisecond-precision recency columns,
backfills them from the existing updated timestamp, creates list
indexes, and includes an insert trigger so older binaries writing to a
migrated database seed recency without causing later mutations to
advance it.
Generic metadata upserts preserve existing recency values. Turn-start
updates use a dedicated monotonic touch, and process-local allocation
keeps millisecond cursor values unique. State DB list, search, read,
filtered-list repair, rollout fallback propagation, and app-server
conversions all carry the new field.
## API
`Thread` responses include:
```ts
recencyAt?: number
```
`thread/list` and `thread/search` accept:
```json
{ "sortKey": "recency_at" }
```
Generated TypeScript and JSON schemas are included.
## Validation
- `just test -p codex-state` — 146 passed
- `just test -p codex-rollout` — 69 passed
- `just test -p codex-thread-store` — 81 passed
- `just test -p codex-app-server-protocol` — 231 passed
- Focused app-server list ordering, response mapping, archive/unarchive,
and resume lifecycle tests passed
- Scoped `just fix` for state, rollout, thread-store,
app-server-protocol, and app-server
- `just fmt`
- `git diff --check`
- Independent correctness, simplicity, elegance, security, and
test-quality reviews; actionable ordering, lifecycle, query-projection,
and timestamp-uniqueness findings were addressed
## Why
app-server may run on a different OS from the selected exec-server
environment. Parsing that environment’s cwd with the Codex host’s path
rules prevents thread startup.
## What
Carry environment cwd values as `LegacyAppPathString` at the app-server
boundary and `PathUri` internally. Existing tool-call schemas and
relative-path behavior stay host-native; remaining local-only consumers
convert explicitly and leave follow-up TODOs.
The Wine integration test verifies app-server can start a thread and
complete an ordinary turn with a Windows environment cwd from Linux.
## Validation
- `bazel test //codex-rs/core/tests/remote_env_windows:smoke-test
--test_output=errors`
- focused app-server environment-selection and protocol schema tests
- scoped Clippy for `codex-core` and `codex-app-server-protocol`
Stacked on #27365.
## Stack note
[#27365](https://github.com/openai/codex/pull/27365) kept `thread/start`
unchanged and converted its input in `thread_processor`. This PR updates
`thread/start` to accept explicit functions and namespaces directly.
Legacy per-tool arrays are still accepted and converted while reading
the request. As a result, `thread_processor` can validate and pass the
tools through directly, which is why some code added in #27365 is
removed here.
## Why
`thread/start.dynamicTools` still repeats namespace data on each
function even though core now stores explicit namespace groups. The
request API should use the same shape so each namespace has one
description and one member list.
## What changed
- Accept top-level functions and explicit namespace objects in
`dynamicTools`.
- Continue accepting fully legacy flat arrays, including
`exposeToContext`.
- Reject arrays that mix legacy and canonical entries.
- Reuse the protocol types directly and remove the temporary app-server
adapter.
- Update validation, docs, the test client, and generated schemas.
## Test plan
- `just test -p codex-app-server-protocol`
- `just test -p codex-app-server
dynamic_tool_call_round_trip_sends_text_content_items_to_model`
- `just test -p codex-app-server
thread_start_normalizes_legacy_dynamic_tools_into_model_request`
- `just test -p codex-app-server
thread_start_rejects_mixed_dynamic_tool_formats`
- `just test -p codex-app-server
thread_start_rejects_hidden_dynamic_tools_without_namespace`
Follow-up to #27356.
## Stack note
This PR changes Codex's internal dynamic-tool shape while leaving
`thread/start` unchanged. App-server therefore converts the existing
per-tool input into explicit functions and namespaces before passing it
to core.
[#27371](https://github.com/openai/codex/pull/27371) updates
`thread/start` to use the same explicit shape and removes this temporary
conversion.
## Why
Dynamic tools repeat namespace metadata on every function. Core should
keep one explicit namespace with its member tools so descriptions and
membership stay consistent across sessions and runtime planning.
## What changed
- Represent dynamic tools as top-level functions or explicit namespaces
in protocol and session state.
- Read old flat rollout metadata and write the canonical hierarchy.
- Flatten namespace members only when registering callable tools.
- Keep `thread/start.dynamicTools` flat for now and normalize it at the
app-server boundary.
New builds can read old rollout metadata. Older builds cannot read newly
written hierarchical metadata.
## Test plan
- `just test -p codex-app-server
thread_start_normalizes_legacy_dynamic_tools_into_model_request`
- `just test -p codex-protocol
session_meta_normalizes_legacy_dynamic_tools`
- `just test -p codex-core
resume_restores_dynamic_tools_from_rollout_with_sqlite_enabled`
- `just test -p codex-core
tool_search_returns_deferred_dynamic_tool_and_routes_follow_up_call`
- `just test -p codex-core code_mode_can_call_hidden_dynamic_tools`
- `just test -p codex-tools`
## Why
#27870 teaches the MCP extension how to discover stdio MCP servers
declared by a selected executor plugin, but app-server does not yet
install that contributor or initialize its per-thread state. As a
result, `thread/start.selectedCapabilityRoots` can select the plugin
while its MCP servers remain inactive.
This PR closes that app-server wiring gap:
```text
thread/start(selectedCapabilityRoots)
-> initialize the thread's selected-plugin MCP snapshot
-> read the selected plugin's .mcp.json through its environment
-> start declared stdio servers in that environment
-> expose their tools only on the selected thread
```
## What changed
- Install the selected-executor-plugin MCP contributor in app-server
using the existing shared `EnvironmentManager`.
- Initialize its frozen thread snapshot when `thread/start` includes
selected capability roots.
- Document that selected plugin stdio MCPs are activated in their owning
environment.
- Add an app-server E2E covering the complete selection-to-tool-call
path.
The E2E verifies that:
- the selected MCP process receives an executor-only environment value,
proving the tool runs through the selected environment;
- the MCP tool is advertised to the model and can be called;
- a normal MCP config reload does not discard the thread's frozen
selected-plugin registration;
- another thread without the selected root does not see the MCP server.
## Scope
- Existing sessions without `selectedCapabilityRoots` are unchanged.
- Only stdio MCP declarations are activated. HTTP declarations remain
inactive.
- This does not change selected-root persistence across resume/fork or
add hosted-plugin behavior.
## Verification
- Focused app-server E2E:
`selected_executor_plugin_exposes_its_stdio_mcp_only_to_that_thread`
## Stack
Stacked on #27870.
## Why
Clients that display or coordinate spawned subagents need an
authoritative snapshot of a thread's immediate spawned children when
they connect to app-server or recover after missing live events.
`thread/list` cannot query by parent, so clients must otherwise scan
unrelated threads or reconstruct relationships from rollout history and
transient events.
The direct spawn relationship already exists in persisted
`thread_spawn_edges` state. Review and Guardian threads do not
participate in that lifecycle and are intentionally outside this
filter's scope.
## What changed
This adds an experimental `parentThreadId` filter to `thread/list`.
Parent-filtered requests return direct spawned children from persisted
state while preserving the existing response shape, explicit filters,
sorting, and timestamp-only cursor behavior. The lookup does not read
rollout transcripts or recursively return descendants.
Supersedes #25112 with the narrower `thread/list` filter approach.
## How it works
1. An experimental client passes a valid thread ID as `parentThreadId`.
2. App-server routes the list through the existing thread-store and
state-database boundaries.
3. SQLite selects threads whose IDs have a direct persisted spawn edge
from that parent.
4. Omitted provider and source filters include all values; explicit
filters keep ordinary `thread/list` semantics.
5. Grandchildren, Review threads, and Guardian threads are excluded.
## Verification
State (144 tests), rollout (69 tests), and focused app-server
thread-list (31 tests) suites passed. Scoped Clippy checks and
repository formatting also passed. Coverage includes direct spawned
children, omitted grandchildren, pagination, malformed IDs, mixed source
kinds, explicit filters, and operation without rollout files.
## Why
Next slice needed to make progress on the `remote_env_windows` test is
to support passing a Windows cwd for the remote environment and using
that environment's native shell. This lets the test run a real Windows
process instead of only recording an early path or shell mismatch.
## What
- change `TurnEnvironmentSelection.cwd` from `AbsolutePathBuf` to
`PathUri`
- convert local cwd values to URIs when constructing selections
- preserve a remote primary cwd instead of replacing it with the local
legacy fallback
- prefer the selected environment's discovered shell for unified exec,
falling back to the session shell when unavailable
- convert back to a host-native absolute path at current native-only
consumer boundaries
- reject or deny unsupported foreign cwd values at the existing
request-permissions boundary, with TODOs for its future migration
- extend the hermetic Wine test to execute Windows PowerShell in
`C:\windows` and verify successful process completion
- record the current app-server rejection against the same Wine-backed
remote Windows fixture when its cwd is supplied as a native Windows path
## Why
We have some large gaps in our thread start, resume, and pre-sampling
traces that make it hard to tell where latency is coming from.
## What Changed
- Added coarse spans around thread start/resume, turn context
construction, rollout reconstruction, skill/plugin loading, and tool
preparation.
- Added a breakdown of discoverable-tool preparation across connector
loading, plugin discovery, and local plugin details.
## Testing
- `cargo check -p codex-app-server -p codex-core -p codex-core-skills -p
codex-core-plugins`
- Built the app-server locally and exercised thread start, first turn,
follow-up turn, server restart, thread resume, and a resumed turn.
## Why
Turn construction passed resolved environments through several layers
while leaving the environment shell unresolved. As a result,
model-visible environment context could fall back to the session shell
instead of reporting the selected remote environment's shell.
Resolve environment metadata at the turn-context boundary so each turn
carries the shell that belongs to its selected environment. Keep request
validation in app-server, where invalid selections can be returned as
straightforward JSON-RPC errors without coupling core turn construction
to that policy.
## What changed
- resolve environment selections eagerly in
`new_turn_context_from_configuration`
- store the full resolved `Shell` on each `TurnEnvironment`
- simplify the now-redundant resolved-environment constructor plumbing
- keep duplicate and unknown-environment validation as a small
app-server preflight
- add a remote-environment integration test that runs a full
`test_codex` turn and verifies the model-visible environment message
reports `bash`
## Testing
- `cargo check -p codex-core --test all -p codex-app-server`
- `remote_test_env_exposes_bash_shell_to_model` on the Linux
remote-executor harness
## Why
Clients can archive and unarchive threads today, but there is no
app-server API for permanently removing a thread. Deletion also needs to
cover the full session tree: deleting a main thread should remove
spawned subagent threads and the related local metadata instead of
leaving orphaned rollout files, goals, or subagent state behind.
## What
- Adds the v2 `thread/delete` request and `thread/deleted` notification,
with the response shape kept consistent with `thread/archive`.
- Implements local hard delete for active and archived rollout files.
- Deletes the requested thread's state DB row as the commit point, then
best-effort cleans associated state including spawned descendants,
goals, spawn edges, logs, dynamic tools, and agent job assignments.
- Updates app-server API docs and generated protocol schema/TypeScript
fixtures.
## Summary
Codex Apps needs app-server as the source of truth for chat-started
background terminals instead of guessing from local process trees.
This PR adds experimental v2 APIs to list and terminate background
terminals for a loaded thread using app-server process ids, so clients
can manage background terminals without local PID discovery.
## Changes
- `thread/backgroundTerminals/list` returns paginated background
terminal records with `itemId`, app-server `processId`, `command`,
`cwd`, nullable `osPid`, nullable `cpuPercent`, and nullable `rssKb`.
- `thread/backgroundTerminals/terminate` terminates one running
background terminal by app-server `processId` and returns whether a
process was terminated.
- Background terminal list and terminate operations use unified-exec
process manager state as their source of truth.
## Why
- `ThreadSource` currently defines a closed set of core-owned values
- Product features also create threads for background or scheduled work
- Adding every product-specific value to the core enum would require
repeated `codex-rs` protocol changes
- Feature-backed values let product callers provide precise attribution
while preserving the existing core classifications
## What Changed
- Adds `ThreadSource::Feature(String)` for app-owned thread source
values
- Represents all app-server v2 thread sources as scalar strings, so a
feature source is supplied as `"automation"`
- Persists and emits the feature's plain string label, so `"automation"`
produces `thread_source="automation"` in analytics
- Keeps `user`, `subagent`, and `memory_consolidation` as explicit
core-owned values and regenerates the app-server schemas and TypeScript
bindings
## Verification
- `just write-app-server-schema`
- `cargo check --workspace`
- `just test -p codex-protocol
feature_thread_source_serializes_as_its_app_owned_label`
- `just test -p codex-app-server-protocol
thread_sources_round_trip_as_scalar_labels`
- `cargo test -p codex-analytics
thread_initialized_event_serializes_expected_shape`
- `just fmt`
## Why
CCA is moving toward a split runtime where the orchestrator may not have
a filesystem, while executors can expose preinstalled plugins and
skills. A thread therefore needs to select capabilities without asking
app-server or core to interpret executor-owned paths through the
orchestrator's filesystem.
The longer-term model is broader than executor skills:
- A plugin is a bundle of skills, MCP servers, connectors/apps, and
hooks.
- A plugin root can be local, executor-owned, or hosted by a backend.
- Components inside one plugin can use different access and execution
mechanisms. A skill may be read from a filesystem or through backend
tools; an HTTP MCP server can run without an executor; a stdio MCP
server or hook needs an execution environment.
- Core should carry generic extension initialization data. The extension
that owns a component should discover it, expose it to the model, and
invoke it through the appropriate runtime.
This PR establishes that architecture through one complete vertical:
selecting a root on an executor, discovering the skills beneath it,
exposing those skills to the model, and reading an explicitly invoked
`SKILL.md` through the same executor.
## Contract
`thread/start` gains an experimental `selectedCapabilityRoots` field:
```json
{
"selectedCapabilityRoots": [
{
"id": "deploy-plugin@1",
"location": {
"type": "environment",
"environmentId": "workspace",
"path": "/opt/codex/plugins/deploy"
}
}
]
}
```
The root is intentionally not classified as a "plugin" or "skill" in the
API. It can point at a standalone skill, a directory containing several
skills, or a plugin containing skills and other components. This PR only
teaches the skills extension how to consume it; later extensions can
resolve MCP, connector, and hook components from the same selection.
The platform-supplied `id` is stable selection identity. The location
says which runtime owns the root and gives that runtime an opaque path.
App-server does not inspect or canonicalize the path.
## What changed
### Generic thread extension initialization
App-server converts selected roots into `ExtensionDataInit`. Core
carries that generic initialization value until the final thread ID is
known, then creates thread-scoped `ExtensionData` before lifecycle
contributors run.
This keeps `Session` and core independent of the capability-selection
contract. The initialization value is consumed during construction; it
is not retained as another long-lived `Session` field.
### Executor-backed skills
The skills extension now owns an `ExecutorSkillProvider` that:
- resolves the selected environment through `EnvironmentManager`
- discovers, canonicalizes, and reads skills through that environment's
`ExecutorFileSystem`
- contributes the bounded selected-skill catalog as stable developer
context
- reads an explicitly invoked skill body through the authority that
listed it
- warns when an environment or root is unavailable
- never falls back to the orchestrator filesystem for an executor-owned
root
Skill catalog and instruction fragments have hard byte bounds, which
also bound them below the 10K-token per-item context limit. If a
selected executor skill has the same name as a legacy local skill, the
executor selection owns that invocation and the local body is not
injected a second time.
Existing local and bundled skill loading remains in place. Omitting
`selectedCapabilityRoots` therefore preserves current local-only
behavior.
## Current semantics
- Only environment-owned locations are represented in this first
contract.
- Roots are resolved by the destination extension, not by app-server or
core.
- An unavailable executor or invalid root produces a warning and no
capabilities from that root; it does not trigger a local-filesystem
fallback.
- Selection applies to a newly started active thread.
- MCP servers, connectors, and hooks beneath a selected plugin root are
not activated yet.
- Selection is not yet persisted or inherited across resume, fork, or
subagent creation. Existing local capabilities continue to behave as
they do today in those flows.
## Planned vertical follow-ups
1. **Hosted HTTP MCP:** add an extension-backed HTTP MCP source that
works without an executor, then replace the special-purpose MCP plugins
loader with that implementation.
2. **Executor MCP:** register and execute stdio MCP servers through the
environment that owns the selected plugin root.
3. **Backend skills:** add a hosted skill source whose catalog and
bodies are accessed through extension tools rather than a filesystem.
4. **Connectors and hooks:** activate those components through their
owning extensions, using the same selected-root boundary and
component-specific runtime.
5. **Durable selection:** define the desired-selection lifecycle,
persist it, and make resume, fork, and subagent inheritance explicit
rather than accidental.
6. **Local convergence:** incrementally route existing local plugin,
skill, and MCP loading through the same extension model while preserving
current local behavior.
Each follow-up remains reviewable as an end-to-end capability. The
platform selects roots, generic thread extension data carries the
selection, and the owning extension resolves and operates its component.
## Verification
Coverage added for:
- app-server end-to-end discovery and explicit invocation of a skill
inside an executor-selected plugin root
- exclusive invocation when a selected executor skill collides with a
local skill name
- executor filesystem authority for discovery, canonicalization, and
reads
- thread extension initialization before lifecycle contributors run
- stable executor catalog context, explicit invocation, context
rebuilding, hidden skills, and preserved host/remote catalog behavior
Targeted protocol, core-skills, skills-extension, core lifecycle, and
app-server executor-skill tests were run during development.
## Summary
- reuse the history-bearing `StoredThread` loaded while probing for a
running thread
- avoid rereading and reparsing the rollout when that probe finds no
active process
- reload after shutting down a loaded thread because shutdown may flush
newer rollout items
- add a regression test that verifies cold resume performs one
history-bearing store read
## Problem
`thread/resume` first reads the persisted thread with history while
checking whether the thread is
already running. When no running process exists, cold resume currently
falls through to
`resume_thread_from_rollout`, which reads and parses the same history
again.
That duplicate work grows with rollout size and remains on the
synchronous resume path even when
the caller requests `excludeTurns`.
## Background
The duplicate read was introduced by #24528, which fixed resume
overrides for idle cached
threads. To support resumes specified by rollout path,
`resume_running_thread` began loading the
stored thread with history so it could resolve the canonical thread ID
and determine whether a
cached `CodexThread` was already loaded.
That history is needed when the loaded-thread path handles the request.
On a cold miss, however,
the function's boolean result could only report that no loaded thread
handled the request. It
discarded the history-bearing `StoredThread`, and the normal cold-resume
path immediately loaded
and parsed the same rollout again.
This change preserves the idle cached-thread behavior from #24528 while
allowing the cold-resume
path to reuse the probe result.
## Performance
I benchmarked real retained rollouts using isolated `CODEX_HOME`
directories, explicit rollout
paths, debug builds of the commit and its exact parent, and alternating
parent/patch order. The
table below uses `thread/resume` with `excludeTurns: true`; response
payload sizes were identical.
| Rollout size | Records | Parent median | Patch median | Median paired
saving |
| ---: | ---: | ---: | ---: | ---: |
| 6 MB | 3,574 | 541 ms | 441 ms | 132 ms |
| 30 MB | 15,220 | 1.505 s | 1.041 s | 701 ms |
| 60 MB | 31,453 | 2.644 s | 1.742 s | 970 ms |
| 149 MB | 100,874 | 10.506 s | 7.156 s | 3.350 s |
| 559 MB | 259,734 | 27.759 s | 16.725 s | 9.836 s |
The absolute saving increases with thread size, as expected when
removing one complete JSONL
history read and parse. Total resume time is also content-dependent, so
the relationship is not
perfectly linear.
I also tested full-history resume with `excludeTurns: false`. The
response payload was
byte-identical between variants, and the same size-dependent improvement
remained visible:
| Rollout size | Parent median | Patch median | Median paired saving |
| ---: | ---: | ---: | ---: |
| 6 MB | 1.052 s | 904 ms | 270 ms |
| 30 MB | 2.667 s | 1.762 s | 924 ms |
| 60 MB | 8.464 s | 6.272 s | 3.680 s |
| 149 MB | 26.719 s | 12.118 s | 14.601 s |
| 559 MB | 40.359 s | 25.475 s | 16.590 s |
## Validation
- `just test -p codex-app-server
cold_thread_resume_reuses_non_local_history_probe`
- `just fix -p codex-app-server -p codex-thread-store`
- `just fmt`
## Why
Thread cwd and environment selections are a single logical setting in
core: updating one without the other can silently desynchronize the
next-turn execution context. This change makes that relationship
explicit in the internal thread settings flow while preserving the
existing app-server public API shape.
## What changed
- Moved the cwd/environment pair through internal
`ThreadSettingsOverrides.environment_settings` instead of a top-level
internal `cwd` field.
- Kept `thread/settings/update` public params unchanged, with app-server
translating top-level `cwd` into the paired internal settings shape.
- Moved `Op::UserInput` environment overrides into thread settings so
user turns and settings updates use the same core path.
- Updated core, app-server, MCP, memories, sample, and test callsites to
construct the paired settings shape.
## Verification
- `git diff --check`
- Local test run starting after PR creation.
Stacked on #26532.
## Why
#26532 moves cwd normalization to the app-server/core boundary.
`runtimeWorkspaceRoots` still accepted raw paths in v2 requests and in
`ConfigOverrides`, which left core responsible for interpreting those
roots later. This makes runtime workspace roots follow the same
absolute-path boundary as cwd.
## What
- Change v2 `runtimeWorkspaceRoots` request fields for `thread/start`,
`thread/resume`, `thread/fork`, and `turn/start` to `AbsolutePathBuf`.
- Deduplicate already-absolute runtime roots in app-server handlers and
pass them through `ConfigOverrides.workspace_roots` as
`AbsolutePathBuf`.
- Update TUI and exec client request builders to pass absolute runtime
roots directly.
- Update app-server docs, schema fixtures, and focused tests for
absolute runtime roots.
## Testing
- `just test -p codex-app-server-protocol`
- `just test -p codex-app-server runtime_workspace_roots`
- `just test -p codex-core
session_permission_profile_rebinds_runtime_workspace_roots`
- `just test -p codex-tui app_server_session`
- `just test -p codex-exec`
## Summary
- accept non-empty model-defined reasoning effort values while
preserving built-in effort behavior
- propagate the non-Copy effort type through core, app-server, TUI,
telemetry, and persistence call sites
- preserve string wire encoding and expose an open-string schema for
clients
- update model selection and shortcut behavior for model-advertised
effort values
## Root cause
`ReasoningEffort` gained a string-backed custom variant, so it could no
longer implement `Copy` or rely on derived closed-enum serialization.
Existing consumers still moved effort values from shared references and
assumed a fixed built-in value set.
## Validation
- `just fmt`
- Local tests and compilation were not run per request; relying on CI.
## Why
Workspace-specific `AGENTS.md` loading needs to use the selected
environment filesystem so remote workspaces and child agents read
instructions from their actual environment instead of the host
filesystem. The app-server should report the same instruction sources
the initialized thread actually loaded, rather than independently
rescanning configuration and filesystem state.
## What changed
- Introduce `LoadedAgentsMd` to retain ordered user, project, and
internal instructions with their provenance.
- Load and canonicalize workspace `AGENTS.md` paths through the primary
`EnvironmentManager` environment, then render the loaded instructions
when constructing turn context.
- Expose cached loaded instruction sources from initialized threads and
use them for app-server start, resume, and fork responses.
- Preserve global `CODEX_HOME` loading and separator behavior while
excluding empty project files that did not supply model-visible
instructions.
- Add integration coverage for CLI injection, selected-environment
provenance and rendering, empty environment selection, and cached
sources on loaded-thread resume.
## Validation
- `just test -p codex-core agents_md`
- `just test -p codex-core
selected_environment_sources_match_model_visible_instructions`
- `just test -p codex-exec agents_md`
- `just test -p codex-app-server instruction_sources`
- `just test -p codex-app-server --status-level fail`
Fixes#25950.
## Why
Forking a renamed thread could fall back to the source thread's
first-prompt title because the fork path did not preserve the source's
explicit name. That meant fork-of-renamed-fork flows could show stale
sidebar labels even though the user had renamed the parent.
## What changed
`thread/fork` now reads the source thread's distinct `name`, normalizes
it, persists it onto materialized forks, and applies it to the returned
API thread. Because the source `name` already excludes first-prompt
pseudo-titles, forks inherit only an explicit user rename instead of
stale generated metadata.
## Why
Fixes#24944.
On Windows, app-server resume could reject an active running thread when
the requested session path used normal `C:\...` form and the
already-running path used verbatim `\\?\C:\...` form. The paths point at
the same JSONL file, but the resume stale-path guard compared raw
`PathBuf`s, so desktop resume and heartbeat flows could fail with a
mismatched-path error.
## What Changed
- Compare requested and active rollout paths with
`path_utils::paths_match_after_normalization`.
- Extend the existing running-thread mismatched-path test with a
Windows-only same-file resume case before the stale-path rejection.
## Verification
- `just test -p codex-app-server
thread_resume_rejects_mismatched_path_for_running_thread_id`
## Summary
Remove the dead experimental `persistExtendedHistory` app-server flag
and collapse rollout persistence to the single policy app-server already
used.
## What Changed
- Removed `persistExtendedHistory` from v2 thread start/resume/fork
params and deleted its deprecation notice path.
- Removed the persistence-mode enums and plumbing through core, rollout,
and thread-store.
- Made rollout filtering mode-free, keeping the existing limited
persisted-history behavior.
## Test Plan
- `just write-app-server-schema`
- `cargo nextest run --no-fail-fast -p codex-app-server-protocol
schema_fixtures`
- `cargo nextest run --no-fail-fast -p codex-app-server
thread_shell_command_history_responses_exclude_persisted_command_executions`
- `cargo nextest run --no-fail-fast -p codex-rollout -p
codex-thread-store`
- final `rg` for removed flag/type names
## Why
This PR
https://github.com/openai/codex/pull/24161#discussion_r3325692763
revealed a subagent data modeling issue, where we overloaded
`forked_from_id` to also mean `parent_thread_id`. That's incorrect since
guardian and review subagents can be a subagent and NOT fork the main
thread's history.
The solution here is to explicitly store a new `parent_thread_id` on
`SessionMeta`, alongside `forked_from_id` which already exists. While
we're at it, also expose it in the app-server protocol on the `Thread`
object.
A thread->subagent relationship and a fork of thread history are
orthogonal concepts.
## What Changed
- Added top-level `parent_thread_id` persistence on `SessionMeta` and
runtime/session plumbing through `SessionConfiguredEvent`,
`CodexSpawnArgs`, `SessionConfiguration`, `ThreadConfigSnapshot`,
`TurnContext`, and `ModelClient`.
- Made turn metadata, request headers, analytics, and subagent-start
events read the separate runtime/top-level parent field instead of
deriving general parent lineage from `SessionSource` or
`forked_from_thread_id`.
- Passed parent lineage separately at delegated subagent, review,
guardian, agent-job, and multi-agent spawn construction sites;
copied-history fork lineage remains derived only from `InitialHistory`.
- Persisted and exposed parent lineage through rollout/thread-store
projections and app-server v2 `Thread.parentThreadId`.
- Updated app-server README text and regenerated app-server schema
fixtures for the additive `parentThreadId` response field.
## Problem
Saved threads can already be archived through app-server RPCs, but the
command line did not expose direct archive or unarchive commands.
## Solution
Add `codex archive <thread>` and `codex unarchive <thread>`, resolving
UUIDs or exact thread names before calling the existing `thread/archive`
and `thread/unarchive` RPCs. The commands support scoped remote flags so
callers can target remote app-server endpoints when archiving or
unarchiving threads.
This also fixes a long-standing bug in `codex resume <thread id>` and
`codex fork <thread id>` that I found when testing the new commands.
These operations shouldn't be allowed on archived sessions. They now
fail with an error that tells the user to run `codex unarchive <thread
id>` first.
## Verification
Added app-server coverage for rejecting archived thread resume by id and
checking that the error includes the matching `codex unarchive <thread
id>` command.
## Summary
The client currently calls `thread/resume` to establish live updates and
immediately follows it with `thread/turns/list` to hydrate recent turns.
This lets `thread/resume` return that page directly, eliminating a round
trip and the ordering/deduplication gap between the two calls.
Experimental clients opt in with `initialTurnsPage: { limit,
sortDirection, itemsView }`. The response returns `initialTurnsPage` as
a `TurnsPage`, including cursors for paging further back in history.
Keeping the controls in a nested opt-in object provides the useful
`thread/turns/list` knobs without spreading page-specific parameters
across `thread/resume`.
## Verification
- `just fmt`
- `just write-app-server-schema --experimental`
- `just write-app-server-schema`
- `cargo test -p codex-app-server-protocol`
- `cargo test -p codex-app-server
thread_resume_initial_turns_page_matches_requested_turns_list_page
--tests`
- `cargo test -p codex-app-server
thread_resume_rejoins_running_thread_even_with_override_mismatch
--tests`
- `just fix -p codex-app-server-protocol -p codex-app-server`
Fixes#24186.
## Why
When the TUI resumes a thread through the local app-server daemon with a
selected workspace, `thread/resume` can hit an already-loaded but idle
cached thread. That path previously rejoined the cached `CodexThread`,
so cwd/config overrides in `ThreadResumeParams` were ignored and the
resumed session kept using the old cwd.
## What changed
App-server now treats a loaded-but-idle thread with no subscribers as a
cache entry when resume overrides differ: it unloads that cached thread
and lets the normal resume path rebuild it with the requested
cwd/config. Threads that still have subscribers, or active runtime work,
continue to rejoin the existing loaded thread so in-flight state remains
observable.
The existing thread teardown helper was generalized from
archive-specific cleanup to shared unload cleanup for this path.
## Summary
Generated memory rows and their stage-one/stage-two job state currently
live in `state_5.sqlite` alongside thread metadata. That makes memory
cleanup and regeneration share the main state schema even though those
rows are memory-pipeline data and can be rebuilt independently from the
durable thread records.
This PR moves the memory-owned tables into a dedicated
`memories_1.sqlite` runtime database while keeping thread metadata in
`state_5.sqlite`.
## Changes
- Adds a separate memories DB runtime, migrator, path helpers, telemetry
kind, and Bazel compile data for `state/memory_migrations`.
- Introduces `MemoryStore` behind `StateRuntime::memories()` and moves
memory table/job operations onto that store.
- Drops the old memory tables from the state DB and recreates their
schema in `state/memory_migrations/0001_memories.sql`.
- Updates memory startup, citation usage tracking, rollout pollution
handling, `debug clear-memories`, and app-server `memory/reset` to
operate through the memories DB.
- Preserves cross-DB behavior by hydrating thread metadata from the
state DB when selecting visible memory outputs and checking stage-one
staleness.
## Verification
- Added/updated `codex-state` tests for deleted-thread memory visibility
and already-polluted phase-two enqueue behavior.
- Updated `debug clear-memories`, app-server `memory/reset`, and
memories startup tests to seed and assert memory rows through
`memories_1.sqlite`.
## Summary
- add experimental `thread/search` for local rollout-backed thread
search using `rg` over JSONL rollouts
- return search-specific result rows with optional previews instead of
storing preview data on `StoredThread` or ordinary `Thread` responses
- keep `thread/list` separate from full-content search and document the
new app-server surface
## Testing
- `cargo test -p codex-app-server-protocol`
- `cargo test -p codex-app-server
thread_search_returns_content_and_title_matches -- --nocapture`
## Summary
- Coerce `path: ""` to `None` at the v2 protocol params deserialization
boundary for `thread/resume` and `thread/fork`.
- Restore the pre-ThreadStore running-thread resume behavior: if
`threadId` is already running, rejoin it by id and treat a non-empty
`path` only as a consistency check; otherwise cold resume keeps `history
> path > threadId` precedence.
- Add protocol, resume, and fork regression coverage for empty path
payloads; refresh app-server schema fixtures for the clarified params
docs.
## Tests
- `just fmt`
- `just write-app-server-schema`
- `cargo test -p codex-app-server-protocol
thread_path_params_deserialize_empty_path_as_none`
- `cargo test -p codex-app-server-protocol --test schema_fixtures`
- `cargo test -p codex-app-server empty_path`
- `RUST_MIN_STACK=8388608 cargo test -p codex-app-server --test all
thread_resume_rejects_mismatched_path_for_running_thread_id`
- `RUST_MIN_STACK=8388608 cargo test -p codex-app-server --test all
thread_resume_uses_path_over_non_running_thread_id`
## Why
The v2 app-server permission profile fields are experimental, but the
previous migration kept a legacy object payload for profile selection.
That made clients aware of server-owned `activePermissionProfile`
metadata such as `extends`, and it kept a
`legacy_additional_writable_roots` path even though
`runtimeWorkspaceRoots` now owns runtime workspace-root selection.
This PR makes the client contract match the intended model: clients
select a permission profile by id, and the server resolves and reports
active profile provenance in response payloads.
Follow-up to #22611.
## What Changed
- Changed `thread/start`, `thread/resume`, `thread/fork`, and
`turn/start` permission profile selection to plain profile id strings.
- Changed `command/exec.permissionProfile` to a plain profile id string
for the same client/server ownership split.
- Removed `PermissionProfileSelectionParams` and the legacy `{ type:
"profile", modifications: [...] }` compatibility deserializer.
- Updated app-server, TUI, and `codex exec` call sites to send only ids,
while keeping `activePermissionProfile` as server response metadata.
- Updated app-server docs and schema fixtures for the revised
`command/exec.permissionProfile` shape.
## Verification
- `cargo test -p codex-app-server-protocol`
- `RUST_MIN_STACK=8388608 cargo test -p codex-app-server`
- `cargo test -p codex-exec`
- `RUST_MIN_STACK=8388608 cargo test -p codex-tui`
---
[//]: # (BEGIN SAPLING FOOTER)
Stack created with [Sapling](https://sapling-scm.com). Best reviewed
with [ReviewStack](https://reviewstack.dev/openai/codex/pull/23360).
* #23368
* __->__ #23360
## Why
The app-server thread lifecycle API should no longer expose the full
`PermissionProfile` value. After the permissions-profile migration,
clients should round-trip only the active profile identity through
`activePermissionProfile` and `permissions` when that identity is known.
The full profile is server-side config. Treating a response-derived
legacy sandbox projection as a new local profile can lose named-profile
restrictions and accidentally widen permissions on the next turn. The
legacy `sandbox` response field remains only as the
compatibility/display fallback.
## What Changed
- Removed `permissionProfile` from `ThreadStartResponse`,
`ThreadResumeResponse`, and `ThreadForkResponse`.
- Stopped populating that field in app-server thread start/resume/fork
responses.
- Updated embedded exec/TUI response mapping to derive display
permission state from local config or the legacy sandbox fallback
instead of a response profile value.
- Added a TUI turn override shape that distinguishes preserving server
permissions, selecting an active profile id, and sending a legacy
sandbox for an explicit local override.
- Preserved remote app-server permissions across turns by sending
`permissions` only when an `activePermissionProfile` id is known, and
otherwise sending no sandbox override unless the user selected a local
override.
- Kept embedded `thread/resume` hydration server-authored when
`activePermissionProfile` is absent, which matches the live-thread
attach path where the server ignores requested overrides.
- Updated the app-server README to remove the obsolete lifecycle
response `permissionProfile` reference. The remaining
`permissionProfile` README references are request-side permission
overrides.
- Regenerated app-server JSON schema and TypeScript fixtures.
- Kept the generated typed response enum exempt from
`large_enum_variant`, matching the existing payload enum exemption after
the lifecycle response variants shrank.
## How To Review
Start with `codex-rs/app-server-protocol/src/protocol/v2/thread.rs` to
confirm the response shape, then check the response construction in
`codex-rs/app-server/src/request_processors`. The generated schema and
TypeScript fixture changes are mechanical follow-through from the
protocol removal.
The TUI behavior is the delicate part: review
`codex-rs/tui/src/app_server_session.rs` for response hydration and
turn-start override projection, then
`codex-rs/tui/src/app/thread_routing.rs` for the decision about whether
the next turn should preserve the server snapshot, send an active
profile id, or send a legacy sandbox for an explicit local override.
## Verification
- `just write-app-server-schema`
- `cargo test -p codex-app-server-protocol
thread_lifecycle_responses_default_missing_optional_fields`
- `cargo test -p codex-exec
session_configured_from_thread_response_uses_permission_profile_from_config`
- `cargo test -p codex-tui --lib thread_response`
- `cargo test -p codex-tui turn_permissions_`
- `cargo test -p codex-tui
resume_response_restores_turns_from_thread_items`
- `cargo test -p codex-analytics
track_response_only_enqueues_analytics_relevant_responses`
- `just fix -p codex-analytics`
- `just fix -p codex-app-server-protocol`
- `just fix -p codex-tui`
- `just argument-comment-lint`
---
[//]: # (BEGIN SAPLING FOOTER)
Stack created with [Sapling](https://sapling-scm.com). Best reviewed
with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22792).
* #22795
* __->__ #22792
## Why
This PR builds on [#22610](https://github.com/openai/codex/pull/22610)
and is the app-server side of the migration from mutable per-turn
`SandboxPolicy` replacement toward selecting immutable permission
profiles by id plus mutable runtime workspace roots.
Once permission profiles can carry their own immutable
`workspace_roots`, app-server no longer needs to mutate the selected
`PermissionProfile` just to represent thread-specific filesystem
context. The mutable part now lives on the thread as explicit
`runtimeWorkspaceRoots`, while `:workspace_roots` remains symbolic until
the sandbox is realized for a turn.
## What Changed
- Replaced the v2 permission-selection wrapper surface with plain
profile ids for `thread/start`, `thread/resume`, `thread/fork`, and
`turn/start`.
- Removed the API surface for profile modifications
(`PermissionProfileSelectionParams`,
`PermissionProfileModificationParams`,
`ActivePermissionProfileModification`).
- Added experimental `runtimeWorkspaceRoots` fields to the thread
lifecycle and turn-start APIs.
- Threaded runtime workspace roots through core session/thread
snapshots, turn overrides, app-server request handling, and command
execution permission resolution.
- Kept session permission state symbolic so later runtime root updates
and cwd-only implicit-root retargeting rebind `:workspace_roots`
correctly.
- Updated the embedded clients just enough to send and restore the new
thread state.
- Refreshed the generated schema/TypeScript artifacts and the app-server
README to match the new contract.
## Verification
Targeted coverage for this layer lives in:
- `codex-rs/app-server-protocol/src/protocol/v2/tests.rs`
- `codex-rs/app-server/tests/suite/v2/thread_start.rs`
- `codex-rs/app-server/tests/suite/v2/thread_resume.rs`
- `codex-rs/app-server/tests/suite/v2/turn_start.rs`
- `codex-rs/core/src/session/tests.rs`
The key regression checks exercise that:
- `runtimeWorkspaceRoots` resolve against the effective cwd on thread
start.
- Profile-declared workspace roots are excluded from the runtime
workspace roots returned by app-server.
- A turn-level runtime workspace-root update persists onto the thread
and is returned by `thread/resume`.
- A named permission profile selected on one turn remains symbolic so a
later runtime-root-only turn update changes the actual sandbox writes.
- A cwd-only turn update retargets the implicit runtime cwd root while
preserving additional runtime roots.
- The protocol fixtures and generated client artifacts stay in sync with
the string-based permission selection contract.
---
[//]: # (BEGIN SAPLING FOOTER)
Stack created with [Sapling](https://sapling-scm.com). Best reviewed
with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22611).
* #22612
* __->__ #22611
## Why
This is the configuration/model half of the alternative permissions
migration we discussed as a comparison point for
[#22401](https://github.com/openai/codex/pull/22401) and
[#22402](https://github.com/openai/codex/pull/22402).
The old `workspace-write` model mixes three concerns that we want to
keep separate:
- reusable profile rules that should stay immutable once selected
- user/runtime workspace roots from `cwd`, `--add-dir`, and legacy
workspace-write config
- internal Codex writable roots such as memories, which should not be
shown as user workspace roots
This PR gives permission profiles first-class `workspace_roots` so users
can opt multiple repositories into the same `:workspace_roots` rules
without using broad absolute-path write grants. It also starts
separating the raw selected profile from the effective runtime profile
by making `Permissions` expose explicit accessors instead of public
mutable fields.
A representative `config.toml` looks like this:
```toml
default_permissions = "dev"
[permissions.dev.workspace_roots]
"~/code/openai" = true
"~/code/developers-website" = true
[permissions.dev.filesystem.":workspace_roots"]
"." = "write"
".codex" = "read"
".git" = "read"
".vscode" = "read"
```
If Codex starts in `~/code/codex` with that profile selected, the
effective workspace-root set becomes:
- `~/code/codex` from the runtime `cwd`
- `~/code/openai` from the profile
- `~/code/developers-website` from the profile
The `:workspace_roots` rules are materialized across each root, so
`.git`, `.codex`, and `.vscode` stay scoped the same way everywhere.
Runtime additions such as `--add-dir` can still layer on later stack
entries without mutating the selected profile.
## Stack Shape
This PR intentionally stops before the profile-identity cleanup in
[#22683](https://github.com/openai/codex/pull/22683) so the base review
stays focused on config loading, workspace-root materialization, and
compatibility with legacy `workspace-write`.
The representation in this PR is therefore transitional: `Permissions`
carries enough state to distinguish the raw constrained profile from the
effective runtime profile, and there are still call sites that must keep
the active profile identity and constrained profile value in sync. The
follow-up PR replaces that with a single resolved profile state
(`ResolvedPermissionProfile` / `PermissionProfileState`) that keeps the
profile id, immutable `PermissionProfile`, and profile-declared
workspace roots together. That follow-up removes APIs such as
`set_constrained_permission_profile_with_active_profile()` where
separate arguments could drift out of sync.
Downstream PRs then build on this base to switch app-server turn updates
to profile ids plus runtime workspace roots and to finish the
user-visible summary behavior. Reviewers should judge this PR as the
workspace-roots foundation, not as the final in-memory shape of selected
permission profiles.
## Review Guide
Suggested review order:
1. Start with `codex-rs/core/src/config/mod.rs`.
This is the main shape change in the base slice. `Permissions` now
stores a private raw `Constrained<PermissionProfile>` plus runtime
`workspace_roots`. Callers use `permission_profile()` when they need the
raw constrained value and `effective_permission_profile()` when they
need a materialized runtime profile. As noted above,
[#22683](https://github.com/openai/codex/pull/22683) replaces this
transitional shape with a resolved profile state that keeps identity and
profile data together.
2. Review `codex-rs/config/src/permissions_toml.rs` and
`codex-rs/core/src/config/permissions.rs`.
These add `[permissions.<id>.workspace_roots]`, resolve enabled entries
relative to the policy cwd, and keep `:workspace_roots` deny-read glob
patterns symbolic until the actual roots are known.
3. Review `codex-rs/protocol/src/permissions.rs` and
`codex-rs/protocol/src/models.rs`.
These add the policy/profile materialization helpers that expand exact
`:workspace_roots` entries and scoped deny-read globs over every
workspace root. This is also where `ActivePermissionProfileModification`
is removed from the core model.
4. Review the legacy bridge in
`Config::load_from_base_config_with_overrides` and
`Config::set_legacy_sandbox_policy`.
This is where legacy `workspace-write` roots become runtime workspace
roots, while Codex internal writable roots stay internal and do not
appear as user-facing workspace roots.
5. Then skim downstream call sites.
The interesting pattern is raw-vs-effective access: state/proxy/bwrap
paths keep the raw constrained profile, while execution, summaries, and
user-visible status use the effective profile and workspace-root list.
## What Changed
- added `[permissions.<id>.workspace_roots]` to the config model and
schema
- added runtime `workspace_roots` state to `Config`/`Permissions` and
`ConfigOverrides`
- made `Permissions` profile fields private and replaced direct mutation
with accessors/setters
- added `PermissionProfile` and `FileSystemSandboxPolicy` helpers for
materializing `:workspace_roots` exact paths and deny-read globs across
all roots
- moved legacy additional writable roots into runtime workspace-root
state instead of active profile modifications
- removed `ActivePermissionProfileModification` and its app-server
protocol/schema export
- updated sandbox/status summary paths so internal writable roots are
not reported as user workspace roots
## Verification Strategy
The targeted tests cover the behavior at the layers where regressions
are most likely:
- `codex-rs/core/src/config/config_tests.rs` verifies config loading,
legacy workspace-root seeding, effective profile materialization, and
memory-root handling.
- `codex-rs/core/src/config/permissions_tests.rs` verifies profile
`workspace_roots` parsing and `:workspace_roots` scoped/glob
compilation.
- `codex-rs/protocol/src/permissions.rs` unit tests verify exact and
glob materialization over multiple workspace roots.
- `codex-rs/tui/src/status/tests.rs` and
`codex-rs/utils/sandbox-summary/src/sandbox_summary.rs` verify the
user-facing summaries show effective workspace roots and hide internal
writes.
I also ran `cargo check --tests` locally after the latest stack refresh
to catch cross-crate API breakage from the private-field/accessor
changes.
---
[//]: # (BEGIN SAPLING FOOTER)
Stack created with [Sapling](https://sapling-scm.com). Best reviewed
with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22610).
* #22612
* #22611
* #22683
* __->__ #22610
## Why
This is a small precursor to the larger permissions-migration work. Both
the comparison stack in
[#22401](https://github.com/openai/codex/pull/22401) /
[#22402](https://github.com/openai/codex/pull/22402) and the alternate
stack in [#22610](https://github.com/openai/codex/pull/22610) /
[#22611](https://github.com/openai/codex/pull/22611) /
[#22612](https://github.com/openai/codex/pull/22612) are easier to
review if the terminology is already settled underneath them.
Because `:project_roots` and `:danger-no-sandbox` have not shipped as
stable user-facing surface area, carrying them forward as aliases would
just add more migration logic to the later stacks. This PR removes that
ambiguity now so the follow-on work can rely on one spelling for each
built-in concept.
## What Changed
- renamed the config-facing special filesystem key from `:project_roots`
to `:workspace_roots`
- dropped unpublished `:project_roots` parsing support in
`core/src/config/permissions.rs`, so new config only recognizes
`:workspace_roots`
- renamed the built-in full-access permission profile id from
`:danger-no-sandbox` to `:danger-full-access`
- dropped unpublished `:danger-no-sandbox` support entirely, including
the old active-profile canonicalization path, and added explicit
rejection coverage for the legacy id
- introduced shared built-in permission-profile id constants in
`codex-rs/protocol/src/models.rs`
- updated `core`, `app-server`, and `tui` call sites that special-case
built-in profiles to use the shared constants and canonical ids
- updated tests and the Linux sandbox README to use `:workspace_roots` /
`:danger-full-access`
## Verification
I focused verification on the three places this rename can regress:
config parsing, active-profile identity surfaced back out of `core`, and
user/server call sites that special-case built-in profiles.
Targeted checks:
-
`config::tests::default_permissions_can_select_builtin_profile_without_permissions_table`
-
`config::tests::default_permissions_read_only_applies_additional_writable_roots_as_modifications`
-
`config::tests::default_permissions_can_select_builtin_full_access_profile`
- `config::tests::legacy_danger_no_sandbox_is_rejected`
- `workspace_root` filtered `codex-core` tests
-
`request_processors::thread_processor::thread_processor_tests::thread_processor_behavior_tests::requested_permissions_trust_project_uses_permission_profile_intent`
-
`suite::v2::turn_start::turn_start_rejects_invalid_permission_selection_before_starting_turn`
- `status::tests::status_snapshot_shows_auto_review_permissions`
-
`status::tests::status_permissions_full_disk_managed_with_network_is_danger_full_access`
-
`app_server_session::tests::embedded_turn_permissions_use_active_profile_selection`
- make ThreadStore::update_thread_metadata accept a broad range of
metadata patches
- keep ThreadStore::append_items as raw canonical history append (no
metadata side effects)
- in the local store, write these metadata updates to a combination of
sqlite and rollout jsonl files for backwards-compat. It special cases
which fields need to go into jsonl vs sqlite vs whatever, confining the
awkwardness to just this implementation
- in remote stores we can simply persist the metadata directly to a
database, no special casing required.
- move the "implicit metadata updates triggered by appending rollout
items" from the RolloutRecorder (which is local-threadstore-specific) to
the LiveThread layer above the ThreadStore, inside of a private helper
utility called ThreadMetadataSync. LiveThread calls ThreadStore
append_items and update_metadata separately.
- Add a generic update metadata method to ThreadManager that works on
both live threads and "cold" threads
- Call that ThreadManager method from app server code, so app server
doesn't need to worry about whether the thread is live or not
## Why
While investigating `codex exec hi` startup latency, the useful
questions were not "is startup slow?" but "which durable bucket is slow
in production?"
The path we observed has a few distinct stages:
1. `thread/start` creates the session
2. startup prewarm builds the turn context, tools, and prompt
3. startup prewarm warms the websocket
4. the first real turn resolves the prewarm
5. the model produces the first token
Before this PR, production telemetry had some of the raw measurements
already:
- aggregate startup-prewarm duration / age-at-first-turn metrics
- TTFT as a metric
- websocket request telemetry
But there was no coherent production event stream for the startup
breakdown itself, and TTFT was metric-only. That made it hard to answer
the same latency questions from OpenTelemetry-backed logs without adding
one-off local instrumentation.
## What changed
Add durable production telemetry on the existing `SessionTelemetry`
path:
- new `codex.startup_phase` OTel log/trace events plus
`codex.startup.phase.duration_ms`
- new `codex.turn_ttft` OTel log/trace events while preserving the
existing TTFT metric
The startup phase event is emitted for the coarse buckets we actually
observed while running `exec hi`:
- `thread_start_create_thread`
- `startup_prewarm_total`
- `startup_prewarm_create_turn_context`
- `startup_prewarm_build_tools`
- `startup_prewarm_build_prompt`
- `startup_prewarm_websocket_warmup`
- `startup_prewarm_resolve`
These phases are intentionally low-cardinality so they remain safe as
production telemetry tags.
## Why this shape
This keeps the instrumentation on the same production path as the rest
of the session telemetry instead of adding a local debug-only trace
mode. It also avoids changing startup behavior:
- prewarm still runs
- no control flow changes
- no extra remote calls
- no user-visible behavior changes
One boundary is intentional: very early process bootstrap that happens
before a session exists is not included here, because this PR uses
session-scoped production telemetry. The expensive buckets we were
trying to understand after `thread/start` are now covered durably.
## Verification
- `cargo test -p codex-otel`
- `cargo test -p codex-core turn_timing`
- `cargo test -p codex-core
regular_turn_emits_turn_started_without_waiting_for_startup_prewarm`
- `cargo test -p codex-core
interrupting_regular_turn_waiting_on_startup_prewarm_emits_turn_aborted`
- `cargo test -p codex-app-server thread_start`
- `just fix -p codex-otel -p codex-core -p codex-app-server`
I also ran `cargo test -p codex-core`; it built successfully and then
hit an existing unrelated stack overflow in
`tools::handlers::multi_agents::tests::tool_handlers_cascade_close_and_resume_and_keep_explicitly_closed_subtrees_closed`.
## Summary
Remote clients can still receive large `thread/resume` histories when
prior turns include MCP tool call payloads or image-generation results.
This adds a temporary response-only redaction path for the known remote
client names.
Longer term we will move towards fully paginated APIs backed by SQLite.
## Changes
- Redact MCP tool call payload-bearing fields in `thread/resume`
responses for `codex_chatgpt_android_remote` and
`codex_chatgpt_ios_remote`.
- Drop `imageGeneration` items from those `thread/resume` responses.
- Keep redaction out of persisted rollout files, `thread/read`,
`thread/turns/list`, live notifications, and token usage replay.
- Cover the behavior with app-server helper tests and a v2 resume
integration test that checks both remote clients plus a non-target
control client.
## Testing
- `cargo test -p codex-app-server thread_resume_redaction`
- `cargo test -p codex-app-server
thread_resume_redacts_payloads_for_chatgpt_remote_clients`
