app-server: use permission ids and runtime workspace roots

codex-rs/app-server-protocol/schema/json/v2/ThreadResumeParams.json

@@ -1,10 +1,6 @@
 {
   "$schema": "http://json-schema.org/draft-07/schema#",
   "definitions": {
-    "AbsolutePathBuf": {
-      "description": "A path that is guaranteed to be absolute and normalized (though it is not guaranteed to be canonicalized or exist on the filesystem).\n\nIMPORTANT: When deserializing an `AbsolutePathBuf`, a base path must be set using [AbsolutePathBufGuard::new]. If no base path is set, the deserialization will fail unless the path being deserialized is already absolute.",
-      "type": "string"
-    },
     "ApprovalsReviewer": {
       "description": "Configures who approval requests are routed to for review. Examples include sandbox escapes, blocked network access, MCP approval prompts, and ARC escalations. Defaults to `user`. `auto_review` uses a carefully prompted subagent to gather relevant context and apply a risk-based decision framework before approving or denying the request. The legacy value `guardian_subagent` is accepted for compatibility.",
       "enum": [
@@ -298,65 +294,6 @@
         }
       ]
     },
-    "PermissionProfileModificationParams": {
-      "oneOf": [
-        {
-          "description": "Additional concrete directory that should be writable.",
-          "properties": {
-            "path": {
-              "$ref": "#/definitions/AbsolutePathBuf"
-            },
-            "type": {
-              "enum": [
-                "additionalWritableRoot"
-              ],
-              "title": "AdditionalWritableRootPermissionProfileModificationParamsType",
-              "type": "string"
-            }
-          },
-          "required": [
-            "path",
-            "type"
-          ],
-          "title": "AdditionalWritableRootPermissionProfileModificationParams",
-          "type": "object"
-        }
-      ]
-    },
-    "PermissionProfileSelectionParams": {
-      "oneOf": [
-        {
-          "description": "Select a named built-in or user-defined profile and optionally apply bounded modifications that Codex knows how to validate.",
-          "properties": {
-            "id": {
-              "type": "string"
-            },
-            "modifications": {
-              "items": {
-                "$ref": "#/definitions/PermissionProfileModificationParams"
-              },
-              "type": [
-                "array",
-                "null"
-              ]
-            },
-            "type": {
-              "enum": [
-                "profile"
-              ],
-              "title": "ProfilePermissionProfileSelectionParamsType",
-              "type": "string"
-            }
-          },
-          "required": [
-            "id",
-            "type"
-          ],
-          "title": "ProfilePermissionProfileSelectionParams",
-          "type": "object"
-        }
-      ]
-    },
     "Personality": {
       "enum": [
         "none",