diff --git a/codex-rs/config/src/schema.rs b/codex-rs/config/src/schema.rs
index 8502bfaf5a..0dbf9f9aad 100644
--- a/codex-rs/config/src/schema.rs
+++ b/codex-rs/config/src/schema.rs
@@ -114,6 +114,10 @@ pub fn features_schema(schema_gen: &mut SchemaGenerator) -> Schema {
             .properties
             .insert(legacy_key.to_string(), schema_gen.subschema_for::<bool>());
     }
+    validation.properties.insert(
+        "tool_registry".to_string(),
+        schema_gen.subschema_for::<codex_features::ToolRegistryConfigToml>(),
+    );
     validation.additional_properties = Some(Box::new(Schema::Bool(false)));
     object.object = Some(Box::new(validation));
 
diff --git a/codex-rs/config/src/strict_config.rs b/codex-rs/config/src/strict_config.rs
index c1523c706c..7809b67931 100644
--- a/codex-rs/config/src/strict_config.rs
+++ b/codex-rs/config/src/strict_config.rs
@@ -159,7 +159,7 @@ fn push_unknown_feature_paths(
     for feature_key in features
         .keys()
         .map(String::as_str)
-        .filter(|key| !is_known_feature_key(key))
+        .filter(|key| *key != "tool_registry" && !is_known_feature_key(key))
     {
         let mut path = prefix
             .iter()
diff --git a/codex-rs/config/src/strict_config_tests.rs b/codex-rs/config/src/strict_config_tests.rs
index 4d5a62df25..b818366846 100644
--- a/codex-rs/config/src/strict_config_tests.rs
+++ b/codex-rs/config/src/strict_config_tests.rs
@@ -88,6 +88,29 @@ foo = true"#;
     );
 }
 
+#[test]
+fn strict_config_accepts_tool_registry_config() {
+    let path = Path::new("/tmp/config.toml");
+
+    for contents in [
+        "[features.tool_registry]\nerror_on_tool_collisions = true\n",
+        "[profiles.work.features.tool_registry]\nerror_on_tool_collisions = true\n",
+    ] {
+        assert_eq!(
+            config_error_from_ignored_toml_fields::<ConfigToml>(path, contents),
+            None
+        );
+    }
+
+    assert!(
+        config_error_from_ignored_toml_fields::<ConfigToml>(
+            path,
+            "[features.tool_registry]\nunknown = true\n",
+        )
+        .is_some()
+    );
+}
+
 #[test]
 fn strict_config_rejects_unknown_profile_feature_key() {
     let path = Path::new("/tmp/config.toml");
diff --git a/codex-rs/core/config.schema.json b/codex-rs/core/config.schema.json
index 8783b9b0c8..f00b64b628 100644
--- a/codex-rs/core/config.schema.json
+++ b/codex-rs/core/config.schema.json
@@ -726,6 +726,9 @@
             "tool_call_mcp_elicitation": {
               "type": "boolean"
             },
+            "tool_registry": {
+              "$ref": "#/definitions/ToolRegistryConfigToml"
+            },
             "tool_search": {
               "type": "boolean"
             },
@@ -3154,6 +3157,16 @@
         }
       ]
     },
+    "ToolRegistryConfigToml": {
+      "additionalProperties": false,
+      "properties": {
+        "error_on_tool_collisions": {
+          "description": "Fail the turn when multiple tools share the same effective name.",
+          "type": "boolean"
+        }
+      },
+      "type": "object"
+    },
     "ToolSuggestConfig": {
       "additionalProperties": false,
       "properties": {
@@ -5322,6 +5335,9 @@
         "tool_call_mcp_elicitation": {
           "type": "boolean"
         },
+        "tool_registry": {
+          "$ref": "#/definitions/ToolRegistryConfigToml"
+        },
         "tool_search": {
           "type": "boolean"
         },
diff --git a/codex-rs/core/src/config/config_tests.rs b/codex-rs/core/src/config/config_tests.rs
index e5620c2a43..c9f1344f95 100644
--- a/codex-rs/core/src/config/config_tests.rs
+++ b/codex-rs/core/src/config/config_tests.rs
@@ -568,6 +568,36 @@ disable_in_process_fallback = true
     Ok(())
 }
 
+#[tokio::test]
+async fn load_config_resolves_tool_registry_config() -> std::io::Result<()> {
+    let codex_home = tempdir()?;
+
+    for (config_toml, error_on_tool_collisions) in [
+        ("", false),
+        (
+            "[features.tool_registry]\nerror_on_tool_collisions = true\n",
+            true,
+        ),
+    ] {
+        let config_toml: ConfigToml =
+            toml::from_str(config_toml).expect("TOML deserialization should succeed");
+        let config = Config::load_from_base_config_with_overrides(
+            config_toml,
+            ConfigOverrides::default(),
+            codex_home.abs(),
+        )
+        .await?;
+
+        assert_eq!(
+            config.tool_registry.error_on_tool_collisions,
+            error_on_tool_collisions
+        );
+        assert!(!config.features.enabled(Feature::CodeMode));
+    }
+
+    Ok(())
+}
+
 #[tokio::test]
 async fn load_config_resolves_token_budget_config() -> std::io::Result<()> {
     for (config_toml, expected) in [
diff --git a/codex-rs/core/src/config/mod.rs b/codex-rs/core/src/config/mod.rs
index 3f7884e902..e74f6668a3 100644
--- a/codex-rs/core/src/config/mod.rs
+++ b/codex-rs/core/src/config/mod.rs
@@ -1030,6 +1030,9 @@ pub struct Config {
     /// Whether to register the update_plan tool.
     pub update_plan_enabled: bool,
 
+    /// Policy for collecting and validating tool runtimes.
+    pub tool_registry: ToolRegistryConfig,
+
     /// Configuration for the experimental code-mode tool surface.
     pub code_mode: CodeModeConfig,
 
@@ -1092,6 +1095,12 @@ pub struct Config {
     pub otel: codex_config::types::OtelConfig,
 }
 
+#[derive(Debug, Clone, Default, PartialEq, Eq, Serialize)]
+pub struct ToolRegistryConfig {
+    /// Fail the turn when multiple tools share the same effective name.
+    pub error_on_tool_collisions: bool,
+}
+
 #[derive(Debug, Clone, Default, PartialEq, Eq, Serialize)]
 pub struct CodeModeConfig {
     pub excluded_tool_namespaces: Vec<String>,
@@ -3640,6 +3649,14 @@ impl Config {
         let experimental_request_user_input_enabled =
             resolve_experimental_request_user_input_enabled(&cfg);
         let update_plan_enabled = resolve_update_plan_enabled(&cfg);
+        let tool_registry = ToolRegistryConfig {
+            error_on_tool_collisions: cfg
+                .features
+                .as_ref()
+                .and_then(|features| features.tool_registry.as_ref())
+                .and_then(|config| config.error_on_tool_collisions)
+                .unwrap_or_default(),
+        };
         let code_mode = resolve_code_mode_config(&cfg);
         let multi_agent_v2 = resolve_multi_agent_v2_config(&cfg);
         let token_budget = resolve_token_budget_config(&cfg, &features)?;
@@ -4172,6 +4189,7 @@ impl Config {
             web_search_config,
             experimental_request_user_input_enabled,
             update_plan_enabled,
+            tool_registry,
             code_mode,
             use_experimental_unified_exec_tool,
             background_terminal_max_timeout,
diff --git a/codex-rs/core/src/session/config_lock.rs b/codex-rs/core/src/session/config_lock.rs
index bbc2e201d6..ecbe73091e 100644
--- a/codex-rs/core/src/session/config_lock.rs
+++ b/codex-rs/core/src/session/config_lock.rs
@@ -11,6 +11,7 @@ use codex_features::FeaturesToml;
 use codex_features::MultiAgentV2ConfigToml;
 use codex_features::RolloutBudgetConfigToml;
 use codex_features::TokenBudgetConfigToml;
+use codex_features::ToolRegistryConfigToml;
 use codex_protocol::ThreadId;
 
 use crate::config::Config;
@@ -153,6 +154,11 @@ fn save_config_resolved_fields(
         .features
         .get_or_insert_with(FeaturesToml::default);
     features.materialize_resolved_enabled(config.features.get());
+    if config.tool_registry.error_on_tool_collisions || features.tool_registry.is_some() {
+        features.tool_registry = Some(ToolRegistryConfigToml {
+            error_on_tool_collisions: Some(config.tool_registry.error_on_tool_collisions),
+        });
+    }
     let mut multi_agent_v2: MultiAgentV2ConfigToml =
         resolved_config_to_toml(&config.multi_agent_v2, "features.multi_agent_v2")?;
     multi_agent_v2.enabled = Some(config.features.enabled(Feature::MultiAgentV2));
@@ -262,6 +268,7 @@ mod tests {
     async fn lock_contains_prompts_and_materializes_features() {
         let mut sc = crate::session::tests::make_session_configuration_for_tests().await;
         let mut config = (*sc.original_config_do_not_use).clone();
+        config.tool_registry.error_on_tool_collisions = true;
         config.multi_agent_v2.subagent_developer_instructions =
             Some("Locked subagent developer instructions.".to_string());
         config.token_budget = Some(crate::config::TokenBudgetConfig {
@@ -318,6 +325,12 @@ mod tests {
             .features
             .as_ref()
             .expect("lock should materialize feature states");
+        assert_eq!(
+            features.tool_registry,
+            Some(ToolRegistryConfigToml {
+                error_on_tool_collisions: Some(true),
+            })
+        );
         let feature_entries = features.entries();
         for spec in codex_features::FEATURES {
             assert_eq!(
@@ -404,15 +417,17 @@ mod tests {
         sc.original_config_do_not_use = Arc::new(config);
 
         let lockfile = sc.to_config_lockfile_toml().expect("lock should serialize");
+        let features = lockfile
+            .config
+            .features
+            .as_ref()
+            .expect("lock should materialize feature states");
 
         assert_eq!(
-            lockfile
-                .config
-                .features
-                .as_ref()
-                .and_then(|features| features.token_budget.as_ref()),
+            features.token_budget.as_ref(),
             Some(&FeatureToml::Enabled(true))
         );
+        assert_eq!(features.tool_registry, None);
     }
 
     #[tokio::test]
diff --git a/codex-rs/features/src/feature_configs.rs b/codex-rs/features/src/feature_configs.rs
index f4c229572a..bbe072424c 100644
--- a/codex-rs/features/src/feature_configs.rs
+++ b/codex-rs/features/src/feature_configs.rs
@@ -4,6 +4,14 @@ use serde::Deserialize;
 use serde::Serialize;
 use std::collections::BTreeMap;
 
+#[derive(Serialize, Deserialize, Debug, Clone, Default, PartialEq, Eq, JsonSchema)]
+#[serde(deny_unknown_fields)]
+pub struct ToolRegistryConfigToml {
+    /// Fail the turn when multiple tools share the same effective name.
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub error_on_tool_collisions: Option<bool>,
+}
+
 #[derive(Serialize, Deserialize, Debug, Clone, Default, PartialEq, Eq, JsonSchema)]
 #[serde(deny_unknown_fields)]
 pub struct CodeModeConfigToml {
diff --git a/codex-rs/features/src/lib.rs b/codex-rs/features/src/lib.rs
index 937dd1407a..fbe41e9ef7 100644
--- a/codex-rs/features/src/lib.rs
+++ b/codex-rs/features/src/lib.rs
@@ -30,6 +30,7 @@ pub use feature_configs::NonPrefixedMcpToolNamesConfigToml;
 use feature_configs::RemovedAppsMcpPathOverrideConfigToml;
 pub use feature_configs::RolloutBudgetConfigToml;
 pub use feature_configs::TokenBudgetConfigToml;
+pub use feature_configs::ToolRegistryConfigToml;
 use legacy::LegacyFeatureToggles;
 pub use legacy::legacy_feature_keys;
 
@@ -658,6 +659,8 @@ pub fn is_known_feature_key(key: &str) -> bool {
 /// Deserializable features table for TOML.
 #[derive(Serialize, Deserialize, Debug, Clone, Default, PartialEq, JsonSchema)]
 pub struct FeaturesToml {
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub tool_registry: Option<ToolRegistryConfigToml>,
     #[serde(default, skip_serializing_if = "Option::is_none")]
     pub code_mode: Option<FeatureToml<CodeModeConfigToml>>,
     #[serde(default, skip_serializing_if = "Option::is_none")]
@@ -736,6 +739,7 @@ impl FeaturesToml {
     pub fn materialize_resolved_enabled(&mut self, features: &Features) {
         self.clear_removed_compatibility_entries();
         let Self {
+            tool_registry: _,
             code_mode,
             code_mode_host,
             non_prefixed_mcp_tool_names,
diff --git a/codex-rs/features/src/tests.rs b/codex-rs/features/src/tests.rs
index ce9e6b29ae..3b7c7dc7ec 100644
--- a/codex-rs/features/src/tests.rs
+++ b/codex-rs/features/src/tests.rs
@@ -27,6 +27,22 @@ fn under_development_features_are_disabled_by_default() {
     }
 }
 
+#[test]
+fn tool_registry_config_is_not_a_feature_toggle() {
+    let features: FeaturesToml =
+        toml::from_str("[tool_registry]\nerror_on_tool_collisions = true\n")
+            .expect("tool registry settings should deserialize");
+
+    assert_eq!(
+        features.tool_registry,
+        Some(crate::ToolRegistryConfigToml {
+            error_on_tool_collisions: Some(true),
+        })
+    );
+    assert!(features.entries().is_empty());
+    assert!(!crate::is_known_feature_key("tool_registry"));
+}
+
 #[test]
 fn executor_capability_discovery_is_an_opt_in_map_feature() {
     let mut features = Features::with_defaults();
@@ -533,6 +549,9 @@ fn materialize_resolved_enabled_writes_all_features_and_preserves_custom_config(
     features.enable(Feature::RespectSystemProxy);
 
     let mut features_toml = FeaturesToml {
+        tool_registry: Some(crate::ToolRegistryConfigToml {
+            error_on_tool_collisions: Some(true),
+        }),
         code_mode_host: Some(FeatureToml::Config(crate::CodeModeHostConfigToml {
             enabled: Some(false),
             disable_in_process_fallback: Some(true),
@@ -560,7 +579,14 @@ fn materialize_resolved_enabled_writes_all_features_and_preserves_custom_config(
 
     features_toml.materialize_resolved_enabled(&features);
 
+    assert_eq!(
+        features_toml.tool_registry,
+        Some(crate::ToolRegistryConfigToml {
+            error_on_tool_collisions: Some(true),
+        })
+    );
     let entries = features_toml.entries();
+    assert!(!entries.contains_key("tool_registry"));
     for spec in crate::FEATURES {
         assert_eq!(
             entries.get(spec.key),
diff --git a/codex-rs/thread-manager-sample/src/main.rs b/codex-rs/thread-manager-sample/src/main.rs
index 22c5fc385c..58d86ad6e7 100644
--- a/codex-rs/thread-manager-sample/src/main.rs
+++ b/codex-rs/thread-manager-sample/src/main.rs
@@ -295,6 +295,7 @@ fn new_config(model: Option<String>, arg0_paths: Arg0DispatchPaths) -> anyhow::R
         web_search_config: None,
         experimental_request_user_input_enabled: true,
         update_plan_enabled: true,
+        tool_registry: Default::default(),
         code_mode: Default::default(),
         use_experimental_unified_exec_tool: false,
         background_terminal_max_timeout: 300_000,