fix

codex-rs/app-server/src/codex_message_processor.rs

@@ -5484,8 +5484,29 @@ impl CodexMessageProcessor {
             let extra_roots = extra_roots_by_cwd
                 .get(&cwd)
                 .map_or(&[][..], std::vec::Vec::as_slice);
+            let config_layer_stack = match load_config_layers_state(
+                &self.codex_home,
+                Some(cwd_abs),
+                &cli_overrides,
+                LoaderOverrides::default(),
+                CloudRequirementsLoader::default(),
+            )
+            .await
+            {
+                Ok(config_layer_stack) => config_layer_stack,
+                Err(err) => {
+                    return SkillLoadOutcome {
+                        errors: vec![crate::skills::model::SkillError {
+                            path: cwd.to_path_buf(),
+                            message: err.to_string(),
+                        }],
+                        ..Default::default()
+                    };
+                }
+            };
+            let effective_skill_roots = skills_manager.effective_skill_roots(&config_layer_stack);
             let outcome = skills_manager
-                .skills_for_cwd_with_extra_user_roots(&cwd, &config, force_reload, extra_roots)
+                .skills_for_cwd_with_extra_user_roots(&cwd, &effective_skill_roots, force_reload, extra_roots, &config_layer_stack)
                 .await;
             let errors = errors_to_info(&outcome.errors);
             let skills = skills_to_info(&outcome.skills, &outcome.disabled_paths);