diff --git a/sdk/typescript/README.md b/sdk/typescript/README.md
index afbbde57e5..6ac29c3b48 100644
--- a/sdk/typescript/README.md
+++ b/sdk/typescript/README.md
@@ -146,4 +146,15 @@ const codex = new Codex({
 });
 ```
 
-Thread options still take precedence for overlapping settings because they are emitted after these global overrides.
+For configuration keys that cannot be expressed as dotted paths, pass raw TOML overrides with `configOverrides`. Each entry
+is forwarded unchanged as a separate `--config` argument, without modifying `CODEX_HOME`:
+
+```typescript
+const codex = new Codex({
+  config: { default_permissions: "audit" },
+  configOverrides: ['permissions.audit.filesystem={":root"="read","/path/to/project/.env"="deny"}'],
+});
+```
+
+Raw overrides are applied after structured `config` overrides and take precedence over them. SDK-managed settings, such as
+`baseUrl`, and thread-specific options are applied afterward and take precedence.
diff --git a/sdk/typescript/src/codex.ts b/sdk/typescript/src/codex.ts
index e3ce4aa0de..c90e935987 100644
--- a/sdk/typescript/src/codex.ts
+++ b/sdk/typescript/src/codex.ts
@@ -13,8 +13,8 @@ export class Codex {
   private options: CodexOptions;
 
   constructor(options: CodexOptions = {}) {
-    const { codexPathOverride, env, config } = options;
-    this.exec = new CodexExec(codexPathOverride, env, config);
+    const { codexPathOverride, env, config, configOverrides } = options;
+    this.exec = new CodexExec(codexPathOverride, env, config, configOverrides);
     this.options = options;
   }
 
diff --git a/sdk/typescript/src/codexOptions.ts b/sdk/typescript/src/codexOptions.ts
index b6abb94b79..caa731ed95 100644
--- a/sdk/typescript/src/codexOptions.ts
+++ b/sdk/typescript/src/codexOptions.ts
@@ -14,6 +14,11 @@ export type CodexOptions = {
    * `--config` parsing.
    */
   config?: CodexConfigObject;
+  /**
+   * Raw `--config key=value` overrides to pass unchanged to the Codex CLI after
+   * structured configuration and before SDK-managed or thread-specific overrides.
+   */
+  configOverrides?: string[];
   /**
    * Environment variables passed to the Codex CLI process. When provided, the SDK
    * will not inherit variables from `process.env`.
diff --git a/sdk/typescript/src/exec.ts b/sdk/typescript/src/exec.ts
index 26741bcc31..e7120bb45e 100644
--- a/sdk/typescript/src/exec.ts
+++ b/sdk/typescript/src/exec.ts
@@ -65,11 +65,13 @@ export class CodexExec {
   private pathDirs: string[];
   private envOverride?: Record<string, string>;
   private configOverrides?: CodexConfigObject;
+  private rawConfigOverrides?: string[];
 
   constructor(
     executablePath: string | null = null,
     env?: Record<string, string>,
     configOverrides?: CodexConfigObject,
+    rawConfigOverrides?: string[],
   ) {
     if (executablePath) {
       this.executablePath = executablePath;
@@ -81,6 +83,7 @@ export class CodexExec {
     }
     this.envOverride = env;
     this.configOverrides = configOverrides;
+    this.rawConfigOverrides = rawConfigOverrides;
   }
 
   async *run(args: CodexExecArgs): AsyncGenerator<string> {
@@ -92,6 +95,12 @@ export class CodexExec {
       }
     }
 
+    if (this.rawConfigOverrides) {
+      for (const override of this.rawConfigOverrides) {
+        commandArgs.push("--config", override);
+      }
+    }
+
     if (args.baseUrl) {
       commandArgs.push(
         "--config",
diff --git a/sdk/typescript/tests/exec.test.ts b/sdk/typescript/tests/exec.test.ts
index eb068f3f1a..24965252a1 100644
--- a/sdk/typescript/tests/exec.test.ts
+++ b/sdk/typescript/tests/exec.test.ts
@@ -7,6 +7,8 @@ import { PassThrough } from "node:stream";
 
 import { describe, expect, it } from "@jest/globals";
 
+import type { CodexConfigObject } from "../src/codexOptions";
+
 jest.mock("node:child_process", () => {
   const actual = jest.requireActual<typeof import("node:child_process")>("node:child_process");
   return { ...actual, spawn: jest.fn() };
@@ -97,6 +99,142 @@ describe("CodexExec", () => {
     expect(resumeIndex).toBeLessThan(imageIndex);
   });
 
+  const configOverrideCases: {
+    name: string;
+    config?: CodexConfigObject;
+    configOverrides?: string[];
+    expectedOverrides: string[];
+  }[] = [
+    {
+      name: "ordinary and dotted structured keys without changing their meaning",
+      config: {
+        model_providers: { "mock.name": "Mock provider" },
+        "features.shell_snapshot": false,
+        features: { plugins: false },
+        sandbox_workspace_write: { network_access: true },
+      },
+      expectedOverrides: [
+        'model_providers.mock.name="Mock provider"',
+        "features.shell_snapshot=false",
+        "features.plugins=false",
+        "sandbox_workspace_write.network_access=true",
+      ],
+    },
+    {
+      name: "raw inline filesystem permissions without altering literal map keys",
+      configOverrides: [
+        'permissions.worker.filesystem={glob_scan_max_depth=4,":root"="read",":workspace_roots"="read","/repo/.env"="deny","/repo/**/*.pem"="deny","/repo/with spaces/.env"="deny","C:\\\\repo\\\\secret.env"="deny"}',
+      ],
+      expectedOverrides: [
+        'permissions.worker.filesystem={glob_scan_max_depth=4,":root"="read",":workspace_roots"="read","/repo/.env"="deny","/repo/**/*.pem"="deny","/repo/with spaces/.env"="deny","C:\\\\repo\\\\secret.env"="deny"}',
+      ],
+    },
+    {
+      name: "raw profile names containing periods and spaces",
+      configOverrides: [
+        'permissions={"scan.profile with spaces"={filesystem={":root"="read","/repo/.env"="deny"}}}',
+      ],
+      expectedOverrides: [
+        'permissions={"scan.profile with spaces"={filesystem={":root"="read","/repo/.env"="deny"}}}',
+      ],
+    },
+    {
+      name: "structured overrides before ordered raw overrides and duplicates",
+      config: { approval_policy: "never", features: { plugins: false } },
+      configOverrides: ['approval_policy="on-failure"', 'approval_policy="on-request"'],
+      expectedOverrides: [
+        'approval_policy="never"',
+        "features.plugins=false",
+        'approval_policy="on-failure"',
+        'approval_policy="on-request"',
+      ],
+    },
+    {
+      name: "an empty raw override list without changing structured configuration",
+      config: { retry_budget: 3 },
+      configOverrides: [],
+      expectedOverrides: ["retry_budget=3"],
+    },
+  ];
+
+  it.each(configOverrideCases)(
+    "passes $name to the Codex CLI",
+    async ({ config, configOverrides, expectedOverrides }) => {
+      const { CodexExec } = await import("../src/exec");
+      spawnMock.mockClear();
+      const child = new FakeChildProcess();
+      spawnMock.mockReturnValue(child as unknown as child_process.ChildProcess);
+
+      setImmediate(() => {
+        child.stdout.end();
+        child.stderr.end();
+        child.emit("exit", 0, null);
+      });
+
+      const exec = new CodexExec("codex", undefined, config, configOverrides);
+      for await (const _ of exec.run({ input: "hi" })) {
+        // no-op
+      }
+
+      const commandArgs = spawnMock.mock.calls[0]?.[1] as string[] | undefined;
+      expect(commandArgs).toEqual([
+        "exec",
+        "--experimental-json",
+        ...expectedOverrides.flatMap((override) => ["--config", override]),
+      ]);
+    },
+  );
+
+  it("lets SDK-managed and thread settings override raw configuration when resuming", async () => {
+    const { CodexExec } = await import("../src/exec");
+    spawnMock.mockClear();
+    const child = new FakeChildProcess();
+    spawnMock.mockReturnValue(child as unknown as child_process.ChildProcess);
+
+    setImmediate(() => {
+      child.stdout.end();
+      child.stderr.end();
+      child.emit("exit", 0, null);
+    });
+
+    const exec = new CodexExec("codex", undefined, { approval_policy: "never" }, [
+      'approval_policy="on-failure"',
+      'openai_base_url="https://raw.example.test"',
+      "sandbox_workspace_write={network_access=true}",
+    ]);
+    for await (const _ of exec.run({
+      input: "resume with overrides",
+      threadId: "thread-id",
+      baseUrl: "https://managed.example.test",
+      approvalPolicy: "on-request",
+      networkAccessEnabled: false,
+    })) {
+      // no-op
+    }
+
+    const commandArgs = spawnMock.mock.calls[0]?.[1] as string[] | undefined;
+    expect(commandArgs).toEqual([
+      "exec",
+      "--experimental-json",
+      "--config",
+      'approval_policy="never"',
+      "--config",
+      'approval_policy="on-failure"',
+      "--config",
+      'openai_base_url="https://raw.example.test"',
+      "--config",
+      "sandbox_workspace_write={network_access=true}",
+      "--config",
+      'openai_base_url="https://managed.example.test"',
+      "--config",
+      "sandbox_workspace_write.network_access=false",
+      "--config",
+      'approval_policy="on-request"',
+      "resume",
+      "thread-id",
+    ]);
+  });
+
   it("allows overriding the env passed to the Codex CLI", async () => {
     const { CodexExec } = await import("../src/exec");
     spawnMock.mockClear();
diff --git a/sdk/typescript/tests/run.test.ts b/sdk/typescript/tests/run.test.ts
index 86b57bc7ee..a359513398 100644
--- a/sdk/typescript/tests/run.test.ts
+++ b/sdk/typescript/tests/run.test.ts
@@ -487,6 +487,47 @@ describe("Codex", () => {
     }
   });
 
+  it("passes raw permission maps unchanged while preserving override precedence", async () => {
+    const { url, close } = await startResponsesTestProxy({
+      statusCode: 200,
+      responseBodies: [
+        sse(
+          responseStarted("response_1"),
+          assistantMessage("Raw config overrides applied", "item_1"),
+          responseCompleted("response_1"),
+        ),
+      ],
+    });
+
+    const deniedPath = path.join(os.tmpdir(), "codex-sdk-config.env");
+    const permissionOverride = `permissions.sdk_test.filesystem={":root"="read",${JSON.stringify(deniedPath)}="deny"}`;
+    const { args: spawnArgs, restore } = codexExecSpy();
+    const { client, cleanup } = createTestClient({
+      baseUrl: url,
+      apiKey: "test",
+      config: { approval_policy: "never", default_permissions: "sdk_test" },
+      configOverrides: [permissionOverride, 'approval_policy="on-failure"'],
+    });
+
+    try {
+      const thread = client.startThread({ approvalPolicy: "on-request" });
+      await thread.run("apply raw config overrides");
+
+      const commandArgs = spawnArgs[0];
+      expectPair(commandArgs, ["--config", permissionOverride]);
+      expectPair(commandArgs, ["--config", 'default_permissions="sdk_test"']);
+      expect(collectConfigValues(commandArgs, "approval_policy")).toEqual([
+        'approval_policy="never"',
+        'approval_policy="on-failure"',
+        'approval_policy="on-request"',
+      ]);
+    } finally {
+      cleanup();
+      restore();
+      await close();
+    }
+  });
+
   it("passes additionalDirectories as repeated flags", async () => {
     const { url, close } = await startResponsesTestProxy({
       statusCode: 200,
diff --git a/sdk/typescript/tests/testCodex.ts b/sdk/typescript/tests/testCodex.ts
index a95a685165..5d7b1bc4a4 100644
--- a/sdk/typescript/tests/testCodex.ts
+++ b/sdk/typescript/tests/testCodex.ts
@@ -11,6 +11,7 @@ type CreateTestClientOptions = {
   apiKey?: string;
   baseUrl?: string;
   config?: CodexConfigObject;
+  configOverrides?: string[];
   env?: Record<string, string>;
   inheritEnv?: boolean;
 };
@@ -47,6 +48,7 @@ export function createTestClient(options: CreateTestClientOptions = {}): TestCli
       baseUrl: options.baseUrl,
       apiKey: options.apiKey,
       config: mergeTestConfig(options.baseUrl, options.config),
+      configOverrides: options.configOverrides,
       env,
     }),
   };