app-server: use permission ids and runtime workspace roots

codex-rs/app-server/src/request_processors/thread_lifecycle.rs

@@ -604,6 +604,7 @@ pub(super) async fn handle_pending_thread_resume_request(
         permission_profile,
         active_permission_profile,
         cwd,
+        workspace_roots,
         reasoning_effort,
         ..
     } = pending.config_snapshot;
@@ -620,6 +621,7 @@ pub(super) async fn handle_pending_thread_resume_request(
         model_provider: model_provider_id,
         service_tier,
         cwd,
+        runtime_workspace_roots: workspace_roots,
         instruction_sources,
         approval_policy: approval_policy.into(),
         approvals_reviewer: approvals_reviewer.into(),